Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:77575-79530[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.8e-06 8.5e-05 22.5 4.1 2 23 175 196 174 196 0.96

2 11 0.0001 0.0031 17.6 1.5 1 23 202 224 202 224 0.91

3 11 3.8e-05 0.0012 18.9 1.9 1 23 230 252 230 253 0.96

4 11 1.2e-06 3.7e-05 23.7 1.8 3 23 343 363 341 363 0.97

5 11 1.4e-06 4.4e-05 23.4 1.5 1 23 369 391 369 391 0.96

6 11 1.5e-05 0.00047 20.2 1.2 1 23 397 419 397 419 0.98

7 11 7.8e-05 0.0024 17.9 5.3 1 21 426 446 426 447 0.93

8 11 0.0038 0.12 12.6 3.0 2 23 465 486 464 486 0.96

9 11 3.7e-05 0.0011 19.0 1.1 1 23 492 514 492 514 0.98

10 11 1.6e-07 5e-06 26.4 0.9 1 23 520 542 520 542 0.98

11 11 1.6e-06 5e-05 23.2 4.0 1 23 548 570 548 570 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.8e-06	8.5e-05	22.5	4.1	2	23	175	196	174	196	0.96
2	11	0.0001	0.0031	17.6	1.5	1	23	202	224	202	224	0.91
3	11	3.8e-05	0.0012	18.9	1.9	1	23	230	252	230	253	0.96
4	11	1.2e-06	3.7e-05	23.7	1.8	3	23	343	363	341	363	0.97
5	11	1.4e-06	4.4e-05	23.4	1.5	1	23	369	391	369	391	0.96
6	11	1.5e-05	0.00047	20.2	1.2	1	23	397	419	397	419	0.98
7	11	7.8e-05	0.0024	17.9	5.3	1	21	426	446	426	447	0.93
8	11	0.0038	0.12	12.6	3.0	2	23	465	486	464	486	0.96
9	11	3.7e-05	0.0011	19.0	1.1	1	23	492	514	492	514	0.98
10	11	1.6e-07	5e-06	26.4	0.9	1	23	520	542	520	542	0.98
11	11	1.6e-06	5e-05	23.2	4.0	1	23	548	570	548	570	0.99

Sequence Information

Coding Sequence: atgttTAGAATGGAAGTTTCTCAAgcaaatattgaattaaaagaTTTCCCAAACATTTGTCGAATTTGTCTCCAATCTGGAGAATTTAAATCCTCTCTCCAAACTAACATCTTTGATTCACACAAAACATGTACCGATACATTAAGAAACATAACAGGCATAGAGatgagAAAAGATGATAAATTACCAACTAATATATGTGATACCTGTGTGAAACAACTAGAtgatatagaaatatttataaagttcTGCAAATGCAACGATAATTATCTCAGATCTTTATTAACTGCAGAGGATAAAGATACATTTCATGCATCTGACAACCTTCTTTATGACACTTTTGATGAAGACAGTTTTGATGAAATCGACAACGTAGCACTGTCGGAACGCAAAATTAAAGTTGAATCTGAACTTATAGACAAACCTCCAAAAGAGGAGGGtaagttaaatttgaaaagtgAATTCAAAAGTAGAAAACGAAAagtaaatttgaagaaaactgGTAAGCGCATTGAAGAGTGTGAATGCAAAAtatgtggaaaaaaatttactagaCGAGGAGGATTGAAACGCCATTCAAAAACTCATTTAGGTATCAAGCCATTTGAATGTGAAACTTGTGGTAAGACTTTTGTAGAGAAGGCCACATTAAATAGACACTGTTTAATACACACAGGTGAAAAACCATTTGAGTGTAACCTCTGTGGAAAAACGACGACTAGGAAAGATCAAATTCTGGAACACATTAATAAACACCATCCTAATGCTGTTAACTGCGATTTCGTTATTACAGAACATAAAAGAAGCGATACTGAGAAAAAAGACTTTCCTACtgaatataaaaacaattttaaaaatgatccaAGAAACGAAAAGGACATGAATGAACAGGGTAATACAATTAGAGGCAAAATTGAAAGTGGTGAGGAGCAAATTGATTTCAGCTTTGAAATGAACGAAGACGAAAGCACAAAAATTGGCGAGGGGCGACCTTTTAAAACTAAGAAGAGAATCGAAATTTGCCTGTGTAATCTTTGTGGGAAAGTGTTTAGACGAAAGGGGTACTTGAAAAACCATATGGCCATCCATGCCAAAATCAAACCCTTTGAATGCAAAATTTGCGGGAAAGGATTCACGCAGAGGCATGCCCTAACAAGACACAATTTAGTGCATACAAAGGAACGACCGTTTCAATGCAATCTCTGCGGGAAGACCTTTACCAGAAAGGAGATATTAAtggatcatttaaaaaatcacgaaGAAGGAAGCAAACCTTATCTTTGTTTCCATTGCGGAAAGTGTTTTTCCAACAAGGACTATCTTAGCAAACACTTAAAATACTACTTGCCCGGTAAAGGTAAAAAGAAAACCAACTCGGAAGAGAAAAAGTGCATTTGTCCTCAGTGCGGAAAACAGTTACATTCAGTGTCTTACTTAAAGACGCATCTTCTGACACACACAGGAGAAAAACCGTATGAGTGCAACATATGTGGGAATAGGTTTACAGTTTTGAGGTCTTTGAATCACCacttgaatattcacaaaggtgTAAAGCCGTATCAGTGCACGCAGTGTGACAAAGCCTTTCGAACGTCTGGTTCTCTGCGGAAACATATTTTACTTCACACGGGAGAAAGGCCTTTCAAGTGTACCAGCTGTGAAAAGGGTTTTATCAGACGCAGCCATTTGAAGAGGCATTTGAGGATACATTAG
Protein Sequence: MFRMEVSQANIELKDFPNICRICLQSGEFKSSLQTNIFDSHKTCTDTLRNITGIEMRKDDKLPTNICDTCVKQLDDIEIFIKFCKCNDNYLRSLLTAEDKDTFHASDNLLYDTFDEDSFDEIDNVALSERKIKVESELIDKPPKEEGKLNLKSEFKSRKRKVNLKKTGKRIEECECKICGKKFTRRGGLKRHSKTHLGIKPFECETCGKTFVEKATLNRHCLIHTGEKPFECNLCGKTTTRKDQILEHINKHHPNAVNCDFVITEHKRSDTEKKDFPTEYKNNFKNDPRNEKDMNEQGNTIRGKIESGEEQIDFSFEMNEDESTKIGEGRPFKTKKRIEICLCNLCGKVFRRKGYLKNHMAIHAKIKPFECKICGKGFTQRHALTRHNLVHTKERPFQCNLCGKTFTRKEILMDHLKNHEEGSKPYLCFHCGKCFSNKDYLSKHLKYYLPGKGKKKTNSEEKKCICPQCGKQLHSVSYLKTHLLTHTGEKPYECNICGNRFTVLRSLNHHLNIHKGVKPYQCTQCDKAFRTSGSLRKHILLHTGERPFKCTSCEKGFIRRSHLKRHLRIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014860;
90% Identity: -
80% Identity: -