Malt043207.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- Hr39
- Assembly
- GCA_037114965.1
- Location
- CM073435.1:2554950-2563855[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 5.2e+04 -8.2 10.3 120 182 189 248 104 281 0.36 2 5 1.2 2e+04 -3.9 5.2 33 80 228 276 186 322 0.41 3 5 1.4e-08 0.00023 22.2 0.0 1 47 389 435 389 457 0.71 4 5 0.053 9.1e+02 0.5 0.0 84 116 447 479 410 505 0.67 5 5 2.6e-73 4.5e-69 235.3 0.2 205 408 520 718 499 718 0.96
Sequence Information
- Coding Sequence
- ATGGCCGCAGACATGAGGTCGCCCAACGTATCCGTTACTCCAATTAATATGGAGCCTTATCCGCCCCAGGTTCTCGCCAACGGGGACCACCACCCCCCAAGCGAACCCCCGCAGAGAACAAGGAGCGCCCCGCATCCAGCCGCTTTGATGACGAATGGGTCCACCGACATCCTGGACAGTTCCGATGCCGAAGTCGCCAGGATAGACTTCCAGGCGGTGAATATGAGGTCCAAGAAGAAACGGGACGACATACCGAGGCCCATGAGTTGGGAGGGTGAGCTATCGGATGGAGAGAGAGATGGCATGTGCGTGGACGAAGGTGTCTCGAGTCAGGTTCCCGAAAACCTGTCGCTTTCACAATCCAAGCAATCTTCTACACTGGACTCGAAAGAGAGCCCAATCTTGCGACTGAAACAACCCCCTATGGGGAACTACTCCCTGCACAGCACCCCCAGTAATTCCCCACTGCTTAGCCAACGTCATCCTGTGACAGGAGTGCCAATCATAAGCCATAAAGATCTCATGCACAAGGCTTTAAACGTTCCTCCGACCCCCAGCCCCGACTCAGCTATCCACTCGGCATACAGCGTCTTCAGCTCCCCTAATCAGAGCCCCTTAACGCAACGACACATTACGCTCACGCCGAATCTGAGCAGGAACAACAGCGATGCCTCGCACTCCAGCTGTTGCAGCTACAGCAGCGTTTCGGTTTCTGTATCACCGACTCAGCAGTTCTCCCCAACTCACAGTCCCATACAGGGACGCCATATGCATAGCAGTATTCATAGCAGCCCCCTACATCACAACATCCTCTACCGCAGCCTACAGGAGGACTCCACAATCCAGTACGCCACAGAGCACGACACCCTCGACGAACCCGAAGACAAGGCGGGCCTTCTACACTCGTCACTGCCGGCGCAGCCCGGGATTTCAAGGCAGCAGCTCATCAACAGTCCCTGTCCGATATGCGGGGACAAGATATCCGGGTTCCATTACGGCATCTTCAGCTGCGAATCGTGCAAAGGCTTTTTCAAGAGGACCGTACAGAACAGGAAGAATTACGTGTGTCTGCGGGGTGCCCAGTGTCCCGTCACGGTCGCCACGAGGAAGAAGTGTCCCGCCTGCCGGTTCGACAAGTGCCTGCAATGCGGCATGAAGCTAGAAGctaTCAGAGAAGACAGGACCCGGGGAGGTCGATCCACATACCAGTGTTCATACTCTCTGCCGCCGTCGTTGACTAATCACGCAGAGTTAAGAGCCAGTTCGACTGATCTAAGGCAGGGGATGGGTGAGACCCACCCCGGCCTCACCGTGAAACTAGAACCTCCCGATTCGGGAGTTCCCCATCACAAGAGAAACACTCTGCCAGGGTCAAAAGGTGTCCCTCCATTATTGCAAgaaATAATGGATGTGGAGCACCTGTGGCACTACAACGAAATGGAACTGAACAAGCTTAGCACCGAGGGTCACTTGGGCAAGGAGGGTTCGAGTGGGGCCGTGCACAATCTCTCCACTCACCCGTTGCTAGCCGGCACGGCATTGGCCGGATCCACAGACACCAATCCCGACTTTGTGGCGAACCTGTGCAACATAGCTGATCACAGACTTTACAAGATTGTGAAATGGTGCAAGAGTCTTCcgttatttaagaatatttcgATTGACGATCAAATATGTTTGCTCATCAATTCGTGGTGCGAACTGCTGCTGTTCTCCTGCTGTTTCCGATCCATGTCGACCCCGGGCGAGATACGGGTGTCCCTGGGGAAGAGCATAAACCTGGCTCAGGCCAGGGAGATGGGCATGCAAGCGTGCATAGAGAGAATGTTGAACTTTACAGAGCAGCTTAGGCGACTGAGGGTGGATCAGTACGAGTACATCGCCATGAAGGTTATCGTACTGCTCACGTCTGATACTTCCGAACTTAGAGAGGCTGAGAAGGTGCGCATGTCGCAAGAGAAGGCTCTGAAAGCCCTGCAGGATTACACGTTGTCGCATTATCCCGAGAGTCCTGCCAAATTCGGAGAGCTGCTGCTCCGTATTCCCGAACTACAACGAACCTGCCAGGTGGGAAAAGAGATGCTGACGATAAAATCGAAGGACGGCGACGGACCTAGCTTCAACCTCCTTATGGAGCTCCTGAGGGGGGACCACTGA
- Protein Sequence
- MAADMRSPNVSVTPINMEPYPPQVLANGDHHPPSEPPQRTRSAPHPAALMTNGSTDILDSSDAEVARIDFQAVNMRSKKKRDDIPRPMSWEGELSDGERDGMCVDEGVSSQVPENLSLSQSKQSSTLDSKESPILRLKQPPMGNYSLHSTPSNSPLLSQRHPVTGVPIISHKDLMHKALNVPPTPSPDSAIHSAYSVFSSPNQSPLTQRHITLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHMHSSIHSSPLHHNILYRSLQEDSTIQYATEHDTLDEPEDKAGLLHSSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHAELRASSTDLRQGMGETHPGLTVKLEPPDSGVPHHKRNTLPGSKGVPPLLQEIMDVEHLWHYNEMELNKLSTEGHLGKEGSSGAVHNLSTHPLLAGTALAGSTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSINLAQAREMGMQACIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELREAEKVRMSQEKALKALQDYTLSHYPESPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_01014531;
- 80% Identity
- iTF_01014531;