Malt018399.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- Mbd2
- Assembly
- GCA_037114965.1
- Location
- CM073428.1:82706532-82707149[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-10 2.2e-06 28.7 0.3 3 73 13 101 11 105 0.88
Sequence Information
- Coding Sequence
- ATGAGCGTAAGCACTGTAAGCGGAATAACTATAGAAAAAACGAAATATGAGTGTGCTCAACTACCTAAAAGATGGCAAAGAGAGGACGTATTGCGTAAAACAGGTCTGTCAGTTGGTAAAGTCGATTTATATTATAGTAGAGGTGTAAGAAACGATGCTTCCCTGGTGCCCCCAATACGCCAGACTGCTTCTATCTTCAAACAACCGGTGACGGTGTACAAAACCCAGGAAAGTAAAGTTAAAACCGACTACAAGAATGGTAATCAAGAGAAGCCCAAACAGCTTATGTGGGAGAAACGTTTAGAAGGGTTACGAGCTTGTGATGTGGATGGTTTCGAGTTCGAAGCCATGGAATTGCCAAAGGCCTTGAAACCTGTAGGACCTAACGTAACTGAAGACactattatacagagtgttgccACAGCTCTACACGTGTCCGCACAACCTGTGACGGGCCAGACTGGATCGAAGAACTCGCTAGAAAAAAATCCAGGAGTGTTTTTGGACCCAAAGCAGCCGCTGGTGCATGCTGTTAATATTTCTGAAGACGATATCAAGAGACAGGAAGACAGAGTTGCCTTGGCTAGGAGAAAACTTCAGGAAGCTTTGCGATCCTAA
- Protein Sequence
- MSVSTVSGITIEKTKYECAQLPKRWQREDVLRKTGLSVGKVDLYYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQESKVKTDYKNGNQEKPKQLMWEKRLEGLRACDVDGFEFEAMELPKALKPVGPNVTEDTIIQSVATALHVSAQPVTGQTGSKNSLEKNPGVFLDPKQPLVHAVNISEDDIKRQEDRVALARRKLQEALRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351724;
- 90% Identity
- iTF_01369414; iTF_01226919; iTF_00886026; iTF_01013354; iTF_01289995; iTF_01296206; iTF_00110559; iTF_01310527; iTF_00110560; iTF_00329390; iTF_00328109; iTF_00639551; iTF_00167654; iTF_00852685;
- 80% Identity
- -