Basic Information

Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073426.1:61647806-61659657[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-08 5.1e-06 27.6 0.0 1 40 14 54 14 58 0.89

Sequence Information

Coding Sequence
ATGCCgaagtttattaataaaaatatacgagGGCAATGGGACGAAGAGCATATGAGAACAGCAGTTAGAAAAGTGCTTGATAACGAGTTAGCAATAAGAGATGCGGCAAAACGTTATGGTGTTCCTAAAAGTACTCTTGCTGATAAAGTAAAACACTTGAAAAATAACGAAGAAACACAACTTATTCCAAGTCTTGGACGATATCGCTGCACATTTCCCGCCAACTATGAACAGGAGCTTGTGAACCACATGCGGGATTTGGATAGTCGCCTAATGCCCCTCACCAAAAAAGAATTCTTAAAACTTGCGTTTGATGTGGCGGAGCGCTTAAAAATTCCACATAGATTCAACAGGGAAAAAAAGACTGCTGGGAAAGACTTTTACTACACTTTTCTCCAGTGCCATCCAGAGCTGTCTTTAAGAAATGCCGAGTCAACGAGTTTGCAGAGAGCAGTAGGCTTCAATCGACCACAAGTTGcaagattttttaacaaacttgaagatctaatgcaaaaatataactTCCGAgccaataaaattttcaacgcTGATGAAACCGGTGTGTCTACAGTCCACGAGTGTCGGCACAAAGTCGTCTCAATAAAAGGCAAGAAACAAGTTGGCAAAATGACTTCTGGAGAAAGGGGCCGCACTATAACCGTCTTATTGTGTATCAATGCAGCAGGAGATCAATTCATACCTCCACTATTCATTTTTcctaggaaaaaaattattgaccgACTGAAAATTGGAGCTCCGGAGAATGCCATGTTCCATGCACAGGACTCTGGCTGGATAAAtggtgacattttttttaaatggattcaggaatttgtaaaattcacACGTCCATCTGAAGAGGAGCCAGTTCTTCTAATTGTCGATGGGCATTGCAGCCATAAAGATTTACAAGTCATCAACTTTGCCCGGAAAAACCATATCCATATGTTAAGCTTACCCCCTCATTGCACCCATAAGCTACAACCTTTGGATGTGTGTGTAATGAAGCCATTCAAGGATGCCTACAATGAAGCAGCGTCACGATGGATGAGGCAAAATCCGTTTATGAGAATTAGTGATTATGAAATCGCAGGCCTGGTGAACGACGCCTTTACGAAAATTTGCAGGATGGGCTTATCTAAGAAGGGTTTTGAGTGTAGCGGAATTTATCCATTGAATTCGCAGATTTTCACGGACTTGGATTTTATTGCATCGCAAGGATTGGACGTCCCAGAACCAAGGGAAATTCATGCATCTACATCCACAATTGTTAAGAGATGTAACGAGACAGAAAGCGAGACAATAGACTCTCTAGAATTTCCAAAAATACCAACTTTACCAAATACTCCACCAAAGCTCAACGAACAAGAACTTGgtacatctgaaaataaaacgCCCTCAAAAAAAGTCGTAAAACTGTGCACGTTAAATGAAACTTGCCAACCTTCGACTTCCAAAACCAGCCCCCAACGTTCTGAACAAAGAAATCCCACCATAGGCAGCAGAAAATCATCACAAAAAAATACTTTGGATCCAAAtacgatttttgaaaaaagtattagtAATCTTCTTAAAGAAATTTCACCAATTCCCAATGCTGCTGAACGTAGAATGGTTTCAAGAAAAAGACGTGCTGAAAAAAGTGAAGTGCTTACTTCCACTCCAtttaaaaatgagctggaagagaaaaataaaaataaggctaAAGgagtaaagaaaaatttaagtgAAAATGTTATTCTAgttgagaaaaaaattgcacAAGAACAGAAGAAAAAAAAGCGCATAAAGAGAAGACTAAAGAAACCCAAGAACAAGAAAATGGGGAAACTTATTGTGTCATTTGTCAAGAATGTTTCGACGAAGACTGGATCCAGTGTTGCTcaggaaaaaaatgttaaagtgaAAGGTTTAAGTTTATTTTCGGCAACCCTTTTTATTGCTGGAGAGATGGCAGGAAGTGGAGTTTTGGCGTTACCAAGAGCCGTGGTTAATACAGGTTACATTGGCATTTTACTCCTCGTACTTTTTTGCATAAATGCAGCTTATGGAGGAGTAAGGTTAGGAAATTGTTGGAACATAGTAGAGCAGCGGTATCCAGAGCATAGAATTGAAACCCGAAATCCATACTCGATTATTGCCTTAAGAGCTGTTGGGAAGTTTGGTAGGTAA
Protein Sequence
MPKFINKNIRGQWDEEHMRTAVRKVLDNELAIRDAAKRYGVPKSTLADKVKHLKNNEETQLIPSLGRYRCTFPANYEQELVNHMRDLDSRLMPLTKKEFLKLAFDVAERLKIPHRFNREKKTAGKDFYYTFLQCHPELSLRNAESTSLQRAVGFNRPQVARFFNKLEDLMQKYNFRANKIFNADETGVSTVHECRHKVVSIKGKKQVGKMTSGERGRTITVLLCINAAGDQFIPPLFIFPRKKIIDRLKIGAPENAMFHAQDSGWINGDIFFKWIQEFVKFTRPSEEEPVLLIVDGHCSHKDLQVINFARKNHIHMLSLPPHCTHKLQPLDVCVMKPFKDAYNEAASRWMRQNPFMRISDYEIAGLVNDAFTKICRMGLSKKGFECSGIYPLNSQIFTDLDFIASQGLDVPEPREIHASTSTIVKRCNETESETIDSLEFPKIPTLPNTPPKLNEQELGTSENKTPSKKVVKLCTLNETCQPSTSKTSPQRSEQRNPTIGSRKSSQKNTLDPNTIFEKSISNLLKEISPIPNAAERRMVSRKRRAEKSEVLTSTPFKNELEEKNKNKAKGVKKNLSENVILVEKKIAQEQKKKKRIKRRLKKPKNKKMGKLIVSFVKNVSTKTGSSVAQEKNVKVKGLSLFSATLFIAGEMAGSGVLALPRAVVNTGYIGILLLVLFCINAAYGGVRLGNCWNIVEQRYPEHRIETRNPYSIIALRAVGKFGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01014297;
90% Identity
iTF_01014296;
80% Identity
-