Mmin001955.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000030.1:403138-404333[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.018 1.1e+02 3.8 0.0 22 52 7 37 3 39 0.78 2 4 4.1e-05 0.26 12.2 0.2 22 49 35 62 29 65 0.85 3 4 1.1e-05 0.07 14.1 0.1 21 52 62 93 58 93 0.88 4 4 0.00077 4.9 8.1 0.0 21 48 90 117 88 122 0.88
Sequence Information
- Coding Sequence
- ATGATTACGCGTTCTCCGGAAGATCGGCTTACGTGTAGTTTATGCATGAAGGCCTTTAACACGCAAAGCAATCTGGCCATCCACATGAGGACCCATACCGGTGACAAGCCTTACGTGTGCGAGATATGCCAGAAGTCATTTTCGCAGTCCTGTAATTTGGTAAACCACCTAAGGGTGCATACGGGCGAAAAACCCTTTAAATGTCCCCATTGCGACAGGGCCTTCACACAGTCCGGCAACCTAAACAACCACATACGGCTGCACACGGATGAAAAGCCTTTTAAATGCCACTTTTGCGATAAGGCATTTGTGCAATCAGGCAACCTGAGCTCCCACATCAGGAACAATCACAAATTCGAGAACCCTATAGAAATTGCCCTCACCAGTCATTTTACCTCTTAA
- Protein Sequence
- MITRSPEDRLTCSLCMKAFNTQSNLAIHMRTHTGDKPYVCEICQKSFSQSCNLVNHLRVHTGEKPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLSSHIRNNHKFENPIEIALTSHFTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01013586;
- 90% Identity
- iTF_01013586;
- 80% Identity
- iTF_01013586;