Mmin001363.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000020.1:88527-90725[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1e-05 0.064 14.2 0.0 21 49 279 307 273 310 0.93 2 6 0.86 5.5e+03 -1.6 0.1 24 45 359 380 335 383 0.70 3 6 0.0029 19 6.3 0.0 21 45 384 408 380 416 0.89 4 6 0.21 1.3e+03 0.4 0.0 21 43 471 493 463 498 0.82 5 6 0.014 89 4.1 0.2 21 48 499 526 488 528 0.85 6 6 4e-05 0.26 12.3 0.1 21 48 528 555 524 557 0.89
Sequence Information
- Coding Sequence
- ATGGATTTTACGGAGGCAGATATTTCAGTAAAAACCTTCGAGAAAATATGCCGAATATGTTTACTTCCAAATGAGTTATCCTCAATGTCTATTGAAgcatttaatatatataaaaatcttACTAACATTAAGacTGAGGAATATTTATTCCCCCAAAAAATATGTATCCATTGTGACAGGGAAATCGAGTCTATTAGGTCTTTTATAGATAAATGCCAGAAAAGTTATTCCGTACTTCAAGAGATATTAGAACAAGAAAAGAAATATTCTCATTCTGTGTATGAGGAGATAGGGTGTATTTCGGATGAAGATTGCAAGCTAAACATTGAAAACGTGGTTGAAAATGAGGAGATTCAGAAAATATGTAAATCAGAGGAAAGACCATCAGAAATTAAAGCTGATGAATTTCATTGTGCAAATTGTGACAAGGGATTTTATACCAAAAAGGAGTTGATCGGTCATATTAAGGTACATTCTgatagtaaacaatttttttgtcaagAATGTAATATGGAATTTAAATTGCAAAGGTCATTCCAACGACACAAGCTTGTACATAGCAATTTAAATGCATTGAAATATGACATATGTGAACAAGGGTTTAAGAGAGCCTGTTCAAGAAATACGCACAGAAAAACTCACAatagaacaaaaatatatcAAGCCTTAGACAGGAAATATAGTTGCATGCAATGTGACCGAATTCTTACATCTCGTTCAGCTTTAAATAGTCACATGAAAACGCATACGGGTGAAAAACCATATTCCTGTGCTTACTGTGGAAAATGCTTCCCATATGTCAGCAGCCTAACGGTTCACACACGTTTACACACAGGGGAAACTCCATTTATCTGTTCCATTTGTAATAAGGGTTATCGGAGTTCAACGGGACTAAAGAAGCACAAAGAAGTAAAGCATTTTGAGGTTACCAACTTTAAACGTGTAAATGAAATTGACCATAACGAGGAAATCATTGAAAATGCTAAGGATAAGAGAGAATGTAAGATTTGTAGGAAAGTGCTACACAAACATGGCTTTGGCACTCATATGCGAATACATAGGGTTGAAAAGAAGAAATTTATATGCAcgttttgcaataaaaatttccagaaaaattCTCATCTTGAGAGGCACATTAGGATCCACACAGGTGAAAGGCCCTATAGTTGTAAACTCTGCGGCAAGACCTTCAAGCAAGATGGTGACCTCAAACGTCACGTACTGATTCATTCTGGAGAAAAGCACTTTCAGTGCCAACACTGCGGCAAACAATACTACACTAAAGGATCGCTCGACAGCCATATAGCAGTCCATACTGGCATACCGCGTCGCATTAATTACGAATGCAGCATTTGTCAAAAATCCTTCAAGGAATGCACTCATTATAAGGCCCATGCAAAAACCCTCGACGAGGAGAAACCGTACCTATGTACAATTTGTGGCAAATCGTTTACTGCCAGCGGTAGCCTGAAAGTTCATACCAGGATCCATACCGGAGAACGGCCTTTTATCTGTTCATATTGTAGTAAAAGTTTTCATAGTTCTAGTAGTTTGAAGAGGCATGTAATGAGGAACCACACTGGAGAAAAGCCTTATGTGTGCATGATTTGCCATAAGGGATTTCACGATTCAACTAACTTGAAGCGGCACGTTAAAAGGGTCCATtctgttttggaaatgaaaAAGGATAAAGAGGGACTGGTGATAGCGAAATGA
- Protein Sequence
- MDFTEADISVKTFEKICRICLLPNELSSMSIEAFNIYKNLTNIKTEEYLFPQKICIHCDREIESIRSFIDKCQKSYSVLQEILEQEKKYSHSVYEEIGCISDEDCKLNIENVVENEEIQKICKSEERPSEIKADEFHCANCDKGFYTKKELIGHIKVHSDSKQFFCQECNMEFKLQRSFQRHKLVHSNLNALKYDICEQGFKRACSRNTHRKTHNRTKIYQALDRKYSCMQCDRILTSRSALNSHMKTHTGEKPYSCAYCGKCFPYVSSLTVHTRLHTGETPFICSICNKGYRSSTGLKKHKEVKHFEVTNFKRVNEIDHNEEIIENAKDKRECKICRKVLHKHGFGTHMRIHRVEKKKFICTFCNKNFQKNSHLERHIRIHTGERPYSCKLCGKTFKQDGDLKRHVLIHSGEKHFQCQHCGKQYYTKGSLDSHIAVHTGIPRRINYECSICQKSFKECTHYKAHAKTLDEEKPYLCTICGKSFTASGSLKVHTRIHTGERPFICSYCSKSFHSSSSLKRHVMRNHTGEKPYVCMICHKGFHDSTNLKRHVKRVHSVLEMKKDKEGLVIAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01013599;
- 90% Identity
- iTF_01013599;
- 80% Identity
- iTF_01013599;