Mcic004505.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01018168.1:1-1069[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.098 3.3e+02 1.7 0.0 33 46 5 18 1 23 0.74 2 5 0.11 3.6e+02 1.5 0.0 18 45 45 72 39 76 0.81 3 5 7.6e-05 0.26 11.6 0.1 18 46 73 101 70 109 0.85 4 5 0.00061 2.1 8.7 0.0 21 52 132 163 115 164 0.85 5 5 1.7 5.8e+03 -2.3 0.0 26 44 196 214 190 218 0.71
Sequence Information
- Coding Sequence
- ATGTGTGGGAAAACGTTTAAAGGCGatcggaatttcaaaaggcacATGAAATATCATTTTGATGCTACTTTTGAATGTAGTTATTGTTCAAAGCAGTTTACAGAAAGAGGACTTTTAAACAAGCATCTTTTACGTCACACGGGTGAACGAAGTCACGTTTGTACATTTTGCGatgctaaattttatgaaagTAACGTTCTAAAGATTCATATGAGGCGCCACACGGGCGAAAAGCCTTACATCTGCCCTATCTGCAAAAAAGCATTTTCTCAAAGTAGTCTTTTGAATACCCACAAGAAAATTCATAATGCAGAAAAAGTGCATGTTTGTACACTGTGCAATAAAGCGTTTACACTCCCGTGGCAATTAAAGGCGCACACGCGTATCCACACGAATGAAAAACCTTTTGAATGTCCCTATTGTAAGAAAAGATTTAACCAGAATGGGAATTTGATGATCCATATCAGAATACATACGGGCGTCAAGCCTTTCCACTGTAGTCAATGTGAAAAGGCGTATCCGAGTAAAGGTGAACTAGATGGGCACATGCGACAGCACACAGgcgtgaaaaaagcaaaaaaggtTTCATGTGATCTTTGCTTTAAAAGCTTTGCCGGAAACAgtgatttaaaaatacatatgaGAACCCACACTAAAGAACGTCCCTATTCCT
- Protein Sequence
- MCGKTFKGDRNFKRHMKYHFDATFECSYCSKQFTERGLLNKHLLRHTGERSHVCTFCDAKFYESNVLKIHMRRHTGEKPYICPICKKAFSQSSLLNTHKKIHNAEKVHVCTLCNKAFTLPWQLKAHTRIHTNEKPFECPYCKKRFNQNGNLMIHIRIHTGVKPFHCSQCEKAYPSKGELDGHMRQHTGVKKAKKVSCDLCFKSFAGNSDLKIHMRTHTKERPYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01011457;
- 90% Identity
- iTF_01011457;
- 80% Identity
- iTF_01011457;