Mcic006745.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01023793.1:4500-8521[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.73 2.5e+03 -1.1 0.0 21 46 152 177 146 180 0.85 2 10 1.5 5.2e+03 -2.1 0.0 17 32 273 289 263 300 0.64 3 10 0.021 70 3.8 0.0 17 48 353 384 346 388 0.85 4 10 0.0034 11 6.4 0.0 22 47 386 411 381 417 0.85 5 10 0.00039 1.3 9.4 0.1 21 47 413 439 409 446 0.85 6 10 0.036 1.2e+02 3.1 0.1 21 44 441 464 437 469 0.89 7 10 7.3e-05 0.25 11.7 0.2 12 52 515 554 503 555 0.85 8 10 0.033 1.1e+02 3.2 0.0 22 45 580 603 577 610 0.84 9 10 0.0025 8.6 6.8 0.0 21 49 607 635 602 638 0.86 10 10 0.00034 1.2 9.6 0.0 21 45 635 659 632 662 0.91
Sequence Information
- Coding Sequence
- ATGTTGGGGAAATATGGAGAAACTATCCATAATCGGCCACTGTACCAGCAAAATATAAACGGAATGAATATTGTGGCGGGCTTGTATCACAATCCACCAACTTCGGTAATGTTGCAGTTCCAGAAACCAGGCGGAATTGTCCAGAATCAAAACATACAATTGGTACAATTTCAAAAGCCCCTGGAACAAAACCAAAGCTCAACAACAGCGCCAAATGAATCAAATCTGCAGCCTCAACAAGTTGAATTTAAATGTAGAAATTGTCAGAAACAATTCACATccgaaaatgaaataaatcaaCACATGGCTTCCTGTAATCAGAGACAAAATGAGCCTCCGCCACAGCAACAAGCTCCCGTTGCTATTAGACCGCCTCAGATAATATACGCCACCACAAATCCTCAATACATCAAAACAGAATATCACGGACCTCCGCCGCCTCTCCACAACTTCTCAAATAAACCATTTGAATGTCATCTTTGCGACAAATCCTTCATGACAATCATCAACCTAAACTTGCATCTGCAAATACACGAAAACGATCCTAAAAAACTCGCAATTCAACAGCCGCGAGTCGTTCAGAGCTACCCTATCCTAGTTCCTGCACCAGGAACCGTTTACAATCAGGAAAAAACTGAATTCAGGTGTAAAATTTGCCACAAGGAATTCATAGCCGAAAACTATCTAGAATCCCATATGAAATTGCACGAATACGAGTTCCGAAACCGAGCGCTTTACCAACAAAACATTTATCAAAGTCCTCAAATAATCGCAATTACAACAACGCCGTCAGCACACAAACCAGAGGACCCCCACCGGCCCCAGCAGACCGAACTGAAGCTCCACAAATGTCCATTTTGccataaaatgtttgaaaatattgtcGAGCATTTGAAAATCCATGAAAACGAATACAAAAATCAACAACAAACGGACAATTTAAATTCTCCGCCACCTCCTCAAGTGCAAATTCTGACCCAACCGCCCTCCTATCCGAATCCAAATGCGCATCAAATTCAATCAGGAGAAGAATCTGAGTCCTCGCACGAAGGCACAAGTGATTCGCCATCGGAGCGAACGCACGAATGCTTCATTTGCCATAAAAAATTCTCGAGCGCAGGAAATTTGAGCCTCCACATCAAAATACATTCTGGAGACAAGCCCTTCAAGTGCAGTATTTGCGATAAGGGATTCATTCAGTCGAATAATCTGGCTACGCACATGAAAACACATACAGGTGAAAAACCATATGAATGTTCAGTTTGCCAAAAACACTTCAGTCAATCAAATAATTTGAAGACACACATGAGGACACACACAGGAGAAAAGCCCTACATCTGCACTCTATGCGATAAGCGGTTCAACCAGAAGAACAATCTAACCACCCACATGAGGACCCACACTTTAATATGCTCTCTTTGTGGTGTTCAGTTTGTACATCCTGGCGATTTAACAAATCACATGAAATTCCATGGTCATAATGAGGAAAAACCGTTTATTTGCTCGAAATGTAATCGAGCCTATTTGAGTTTTGATCAGCTGACCGAGCACATGCGATCTCACTCTGTTTTGAGACCGTACCAATGTCACATTTGCGAGAAACAATTCACCCAATCGAACAATCTGAAGACGCACATGAAGACGCATATTTTCCAGGACCCCTACAAATGCCACATGTGCTCCAGGTCATTCCAGACGGTCGAGGACTTTACCCAGCACATGCTGGTCCACACAGCGGACAAACCATACGAATGTACGTACTGCGGGAAAAGATTCATCCAATCAAACAATCTGAAGACGCACGTCCGGACCCACACGGGTGAAAAACCCTTCAtctgcattgtgtgtaataaacATTTCAATCAGAAAAACAATCTCAACACCCATTTGAGGATACACACGGGTGAAAAACCATTTGAGTGCACGATTTGCGATAAAAGATTCAATCAGAGCAACAATCTAAACAAGCACATCAAGACTCACATGGGAATCGTGGAAAAAGAGGAGAGCTGA
- Protein Sequence
- MLGKYGETIHNRPLYQQNINGMNIVAGLYHNPPTSVMLQFQKPGGIVQNQNIQLVQFQKPLEQNQSSTTAPNESNLQPQQVEFKCRNCQKQFTSENEINQHMASCNQRQNEPPPQQQAPVAIRPPQIIYATTNPQYIKTEYHGPPPPLHNFSNKPFECHLCDKSFMTIINLNLHLQIHENDPKKLAIQQPRVVQSYPILVPAPGTVYNQEKTEFRCKICHKEFIAENYLESHMKLHEYEFRNRALYQQNIYQSPQIIAITTTPSAHKPEDPHRPQQTELKLHKCPFCHKMFENIVEHLKIHENEYKNQQQTDNLNSPPPPQVQILTQPPSYPNPNAHQIQSGEESESSHEGTSDSPSERTHECFICHKKFSSAGNLSLHIKIHSGDKPFKCSICDKGFIQSNNLATHMKTHTGEKPYECSVCQKHFSQSNNLKTHMRTHTGEKPYICTLCDKRFNQKNNLTTHMRTHTLICSLCGVQFVHPGDLTNHMKFHGHNEEKPFICSKCNRAYLSFDQLTEHMRSHSVLRPYQCHICEKQFTQSNNLKTHMKTHIFQDPYKCHMCSRSFQTVEDFTQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPFICIVCNKHFNQKNNLNTHLRIHTGEKPFECTICDKRFNQSNNLNKHIKTHMGIVEKEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01011399;
- 90% Identity
- iTF_01011399;
- 80% Identity
- iTF_01011399;