Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: rfx7.L
Assembly: GCA_001014845.1
Location: JXPH01081335.1:3587-7011[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.3e-32 3.3e-28 98.3 0.0 3 77 58 132 56 134 0.97

2 2 0.58 5.9e+03 -1.9 0.0 14 43 781 811 775 814 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.3e-32	3.3e-28	98.3	0.0	3	77	58	132	56	134	0.97
2	2	0.58	5.9e+03	-1.9	0.0	14	43	781	811	775	814	0.74

Sequence Information

Coding Sequence: ATGATGCATTTTGATAATGCGAAACAGCAGATACTACAAATTCTAGAGAAAATCGCACTTTTGAGACCACCCGAAAGACTACTATTGTACCTGCGGATGCCTGGTGGTTATCCTGATACTgATCCATTGAGGCAATCCCAAAACCCGCTAGGAACGCGCTCGGAAATAAATCACACTATAAATTGGGTTCGATCACATTTAGAGCATGATCCGAATGTCTCGATACCGAAACAAGAAGTTTATGATGATTATATGGCATATTGTGCCAGAGTAGACATTAAACCATTATCAACAGCTGATTTTGGAAAAGTAATGAAACAAGTATTTCCCGGCATCCGACCACGAAGGCTTGGAACAAGAGGACATTCCAGATATTGTTACGCTGCAATGCGAAAAGCAACTAAATTAGAAGCGCCCAAACTTCCTGACGTTGGAAATAAAAGCAGCGTCGACTCTGAATCAAACTTAAGCGAAGAAGAATCGTGGAGAGTTATAAAAATGTGGGCTGAAGGAATTCTAACGTCATCATTTTCAAACATCAGTGAATTAGCTAGTTTTATTTCGGCAAACAATTTGAACTCGCCATCCAGCATTCAATCCAGGCAATTGGTGCAGAAAAAGTTGTTGCAGAGAGAGcagaaagaaaagaagaaaattaatAATGTTACAATGAAAAAACGACGGAAGAAGCGCAGAAAAACATTGTCCACTAGTTTAGATCCATCTGATTTCCCAGCTGACGAGTCAGCATTACAAGAAACCGCACAAAATGATAATAGTTCGATTTTGATCCACCACCAGATTCAGATAAAGACGGAGAACGAGTTGGACATTGATGATGATTGTGCAGCAAATTCGACAACAACTTTAACTAATGATGCCTTACTTGTAGAAAATACGAAGCAGCAGCAGCAAAGTACAAATATAATCtgtgataataataatggtgTCTTATTAAATAACGATTCAGCTTCAACCAGCTCCAcctctaaattaaatttagtcaCTCATAATCAGAAGAGGAAGAAAAGTTCTaatgaaaaaagtaacaatAATAATCATCAAGAGCAAGACGAAGACATCCAACATCAAAATATTCTCTGCAAAAAAGTACGCCAAGCGCAACAAGCAAAACTTCTTTCGGCTGCCTCTGCCGCTGCTTCTTTGACTACTTTGTCCTCTCCGTCTTCATCAGCCACAATAAACGCAcaacaatttaaaatgtttacaCCACCGAATCCTGCAAAACGCATGTTGCCAAAAGCGTATCAAACCCGTCAAAAGAGATTGAAGCTGAATTTGCatcagcagcaacaacaacttGCCCTCAACAACTCAACAACTCCTCAATACGATGATATGGGAAACCTGATTACGTTTGAACAAAATGAATTCATCAAAAATGAGCAAGATGACGACTTTATGTTCACTCGGGAACGCTTGATAAGTCTCTGCAACATGGATAAAACAGATTTAGACGATTATTTAAACTGCGAAGACAATTCGCAAGAACCAGAAGCTGAACTTCTTCAATATTTCCCCGAGCATGAGCAGCAGAAAGCGTACGACGTTAATTCAGCATCCTCAAGCAGTAGTGTTCCGTTGCTTGAAAATTACCAGCTGTACGGAAACGAGGAGAACAATGACAAAATTTCACAGCTCCGCAGTTTGTTGGAGCAAAACATTCAAAGCGGAAACGATAAACAGGTAAGCGGTTTATCTTCGGAAAGTACAGACAATTCATCTCAACTCAATCTGCTCCCAGGATCAGCATCGGCTTCGCTAGCCATGCTGTCGCAAAGACatttaacaaataataataacaataataataatgttgataGTAAAAAACACGGCAGCGCCGCTCGCAAAATAAACATTGATATTCCTTACGGAATAAACAATATTACAAATAGTAATAGCAACAGTGCTCCATTGCAAAGCCCAAATTCGCGTCGTAAATTCAGCTTCGTTCCGATTTCGGCGGGTCCTCAATCGCCGCGCGTCTCCACGATGAAAAGCCacggtaataataataatcatcagAATGGGACCCCAAATGCTAGTCCTTTCGTTAGTCCTCGTGATACGCCAATCCATCATAAacgaaataaaaacattttgaatttaaacGTTGGGTATTCACGACCATCCTACTTAAAACCTGAATTGCCGGCGTCTGCGCCTCCTAGTCCATCATTAGTACAAACTTCTTATCGCTATGGTTGTAATAATAATAGCTCATCTAATgggaacaataataataataattccggACCATTTGCACCGATCTGTGGCCCACACAATATGGGGGACCAAACGAATTTAAATAGCGCTGCTGAATCGCGATCCAGCAGCGTCCCATTGATTCCAAACTACGCCAACTATCTCCACAGCAACAATTCCAATTCTAACTTTAGCTCCCTATCCCAAACGCCTGTACCTTCTGAATACAATGACTTTTCTGATCCGAACAATATTCTAGACATGTTGGGAGACTCACATCATATCTCGGCACCAATAAAAATAGAAGACTTTCTCGACCACGATGcggaaatattttcaaaaaatcacaataatCACAATTTCAGCACAATTTCCCGGTCGGTACCTTCGACCCCGCTCCCAGTCCTCAGTTATGGTACAACAAACAGTACTCAAATCAACGGCAAGACAGTATTTGACATGCCCAAATCTGTCCCGACCACCCCGATTTCAATGAACCAAAACTCCTCCTCCGCCGCCGCCTCTCTCTTCAGATACAGTCCGGAGACATCGCGAGACTTCCTAATTAACGGCAACACAATCGATCGCGGCAAGCTCACTTCATTCTTCCAAAATAACGCGCACCTTCACCACCaacaccaccaccaccaccccCACCAGTCATCAACCGAGGTCAGCGGTGAAATGTCCACTCTGTCCGACACAATCGAAGGTCTCTCTGGATTGGACAGTGTTGCGGACGCTATTATCGGATCGGACATTCTGAACAATTTGtag
Protein Sequence: MMHFDNAKQQILQILEKIALLRPPERLLLYLRMPGGYPDTDPLRQSQNPLGTRSEINHTINWVRSHLEHDPNVSIPKQEVYDDYMAYCARVDIKPLSTADFGKVMKQVFPGIRPRRLGTRGHSRYCYAAMRKATKLEAPKLPDVGNKSSVDSESNLSEEESWRVIKMWAEGILTSSFSNISELASFISANNLNSPSSIQSRQLVQKKLLQREQKEKKKINNVTMKKRRKKRRKTLSTSLDPSDFPADESALQETAQNDNSSILIHHQIQIKTENELDIDDDCAANSTTTLTNDALLVENTKQQQQSTNIICDNNNGVLLNNDSASTSSTSKLNLVTHNQKRKKSSNEKSNNNNHQEQDEDIQHQNILCKKVRQAQQAKLLSAASAAASLTTLSSPSSSATINAQQFKMFTPPNPAKRMLPKAYQTRQKRLKLNLHQQQQQLALNNSTTPQYDDMGNLITFEQNEFIKNEQDDDFMFTRERLISLCNMDKTDLDDYLNCEDNSQEPEAELLQYFPEHEQQKAYDVNSASSSSSVPLLENYQLYGNEENNDKISQLRSLLEQNIQSGNDKQVSGLSSESTDNSSQLNLLPGSASASLAMLSQRHLTNNNNNNNNVDSKKHGSAARKINIDIPYGINNITNSNSNSAPLQSPNSRRKFSFVPISAGPQSPRVSTMKSHGNNNNHQNGTPNASPFVSPRDTPIHHKRNKNILNLNVGYSRPSYLKPELPASAPPSPSLVQTSYRYGCNNNSSSNGNNNNNNSGPFAPICGPHNMGDQTNLNSAAESRSSSVPLIPNYANYLHSNNSNSNFSSLSQTPVPSEYNDFSDPNNILDMLGDSHHISAPIKIEDFLDHDAEIFSKNHNNHNFSTISRSVPSTPLPVLSYGTTNSTQINGKTVFDMPKSVPTTPISMNQNSSSAAASLFRYSPETSRDFLINGNTIDRGKLTSFFQNNAHLHHQHHHHHPHQSSTEVSGEMSTLSDTIEGLSGLDSVADAIIGSDILNNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -