Basic Information

Insect: Microvelia longipes
Gene Symbol: -
Assembly: GCA_018340805.1
Location: JACMZG010001859.1:17652036-17657614[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.025 9.9e+02 1.1 0.3 26 48 62 84 58 86 0.89

2 13 1.7e-07 0.0067 17.6 0.1 21 49 86 114 82 118 0.90

3 13 8e-05 3.2 9.1 0.1 22 48 116 142 114 146 0.92

4 13 0.00072 28 6.0 0.1 17 48 140 171 139 175 0.88

5 13 0.00023 9.3 7.6 0.6 20 48 201 229 196 231 0.81

6 13 5.1e-05 2 9.7 0.1 17 49 227 259 225 265 0.90

7 13 0.00068 27 6.1 0.3 19 50 258 289 255 293 0.85

8 13 0.0042 1.7e+02 3.5 0.5 17 49 285 317 284 320 0.79

9 13 0.00019 7.5 7.9 0.5 17 48 399 430 386 434 0.87

10 13 0.014 5.5e+02 1.9 0.1 22 49 433 460 430 463 0.88

11 13 0.18 7.1e+03 -1.7 0.1 35 51 475 491 466 494 0.74

12 13 0.035 1.4e+03 0.6 0.0 26 48 495 517 485 520 0.84

13 13 0.0077 3.1e+02 2.7 0.1 24 48 551 575 545 578 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.025	9.9e+02	1.1	0.3	26	48	62	84	58	86	0.89
2	13	1.7e-07	0.0067	17.6	0.1	21	49	86	114	82	118	0.90
3	13	8e-05	3.2	9.1	0.1	22	48	116	142	114	146	0.92
4	13	0.00072	28	6.0	0.1	17	48	140	171	139	175	0.88
5	13	0.00023	9.3	7.6	0.6	20	48	201	229	196	231	0.81
6	13	5.1e-05	2	9.7	0.1	17	49	227	259	225	265	0.90
7	13	0.00068	27	6.1	0.3	19	50	258	289	255	293	0.85
8	13	0.0042	1.7e+02	3.5	0.5	17	49	285	317	284	320	0.79
9	13	0.00019	7.5	7.9	0.5	17	48	399	430	386	434	0.87
10	13	0.014	5.5e+02	1.9	0.1	22	49	433	460	430	463	0.88
11	13	0.18	7.1e+03	-1.7	0.1	35	51	475	491	466	494	0.74
12	13	0.035	1.4e+03	0.6	0.0	26	48	495	517	485	520	0.84
13	13	0.0077	3.1e+02	2.7	0.1	24	48	551	575	545	578	0.87

Sequence Information

Coding Sequence: atgGAGTCTAGTGTTTACTATGAGTGTATAGAGATACAGGAGCATTATTTAGGAGTCATCAAGACAGagCCTATTGAAGATATAAAACAAGAAGAGGGCATATTAAATGAGTTTGACGGAGATGAACATGATATCAGAACTACCAATGAGAGCTGTAAAGTGGGCAACGAGATGGAGTTTTTTTCTTGTCCACAATGTGCTTTTAAAACTGTTCATGCTCACAGTTTGAAAAGACATATTGCCGTTCAACACAATCAAGAGAAACCATTTAGTTGTGGAATCTGTGATTATAAAGCTGGACAGTCAAGTCAACTAAAACGACATATTAAATTAAGACACACTGACAATAAACCATTTAGTTGTGATCTCTGTGATTTTAAAGCTAGACAAATAAATCAACTAAAACGACATATTACATCAAGACACACTGGTGATAAACGATTTAGTTGTGGAATCTGTGATTATAAAGCTGaacaattaagtaatttaaaaaaccataTCGCAGCGAGGCACACAGGAGATAAAAAATTCTGTTGTGTACATTGTGATCATAAATCAGtgacaaattttaaactaaaacaacacATTGCAGCTAAACACACGGGAGAAAAACCATTTAGTTGTCCTTACTGCGATTATAAAGCCATTCAAAAGTGTAGACTAAAACAACACATTACATCCAGACACACGGGAGAAAAACCATTTATCTGTCCACACTGTGATTATAAAGCTGGACAATCATACGTACTGAGACTACATATTGCATCCAAACACACTGAAGATAAACCATTCATTTGTGCTCATTGCGATTATAAAACAATTCTAAAAAGCAGACTAAAACATCACATTACATCCAGGCACTTTGGAGAAAAACCATTTAGTTGTCAACATTGCAGTTTTAAATCAGtatttagatatactttaaGAAGACATATGAAATTTGTTCACGTCAAAGAGAAACAAAAGGATGTTACAAAAGACTACTTAGGAAATCACATAGCAGCCAATAACACTGAGACCATCAAGGAAATAAAGCAAGAAGGAGATTCCATATTAAATGAGTTTGATGAAAATGGACAAGACATCAGAACTACCAAAGAGAGTTGTAGTGCGGATAGTGAGATAACGTTTATTTCTTGTCCACAATGtgtttttaaaactgtttatCCTCACAGCATGAAAAATCATATTGAATCGAAGCACATTCAAGAAAAACCATTGAGTTGTCCACATTGCAAGTATAAAACTGGAAATTCAGCGCATCTCAAACGACATATTGCCTGCATACACATTGGAGAAAAGCCTTTTAGTTGTTCACTCTGTGACTATAAACCAGCTTCAAGTGCCATTCTCAAACGCCATATTGTAACCCAACATATGGGTGGGAAGCGTTTCTGTTGTCACTACTGTGGCTTTAAAaccaaactaaaaaaatatctagagcgacatattaaatctaaacatttaaaaaagataatattaagtTGTCCAATCTGTAAATTCAAAACAGATGACGATGTTACTTTAAAACAACATCAGGCCATCAAGCATGCTGgtgaaaaacttttaaattgtcATTACTGTAACTTCAAAGCCGATTTGGCAAATGTTCTTGAGCATCATGTCTTAGCCAATCACAAAGAGAAACTACCGTTTAAGTGTCCATACTGCAATTTTAGAACGGCTGATTGTAGGAATATTAAGCCACATGTTGCATCTCAACATAATGGAGGGAAGTCATAG
Protein Sequence: MESSVYYECIEIQEHYLGVIKTEPIEDIKQEEGILNEFDGDEHDIRTTNESCKVGNEMEFFSCPQCAFKTVHAHSLKRHIAVQHNQEKPFSCGICDYKAGQSSQLKRHIKLRHTDNKPFSCDLCDFKARQINQLKRHITSRHTGDKRFSCGICDYKAEQLSNLKNHIAARHTGDKKFCCVHCDHKSVTNFKLKQHIAAKHTGEKPFSCPYCDYKAIQKCRLKQHITSRHTGEKPFICPHCDYKAGQSYVLRLHIASKHTEDKPFICAHCDYKTILKSRLKHHITSRHFGEKPFSCQHCSFKSVFRYTLRRHMKFVHVKEKQKDVTKDYLGNHIAANNTETIKEIKQEGDSILNEFDENGQDIRTTKESCSADSEITFISCPQCVFKTVYPHSMKNHIESKHIQEKPLSCPHCKYKTGNSAHLKRHIACIHIGEKPFSCSLCDYKPASSAILKRHIVTQHMGGKRFCCHYCGFKTKLKKYLERHIKSKHLKKIILSCPICKFKTDDDVTLKQHQAIKHAGEKLLNCHYCNFKADLANVLEHHVLANHKEKLPFKCPYCNFRTADCRNIKPHVASQHNGGKS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01009812;
90% Identity: iTF_01009812;
80% Identity: iTF_01009812;