Mlon010237.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- MBD3
- Assembly
- GCA_018340805.1
- Location
- JACMZG010000022.1:17395166-17403471[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-19 2.3e-15 57.1 0.0 4 71 6 68 3 71 0.88 2 2 0.0046 46 4.8 0.0 28 73 115 168 94 171 0.84
Sequence Information
- Coding Sequence
- ATGTCTGTTGATAAAAGACGATTTGATTGCTCGGCTTTACCTAAAGGATGGCAAAGAGAAGAGATAACCAGGAAAACTGGCTTGTCTGCTGGTAAAGTCGATGTTTCTTATTACagCCCTGAAGGAGAACGAATAGCTACAAAACCTCAACTAGTTCGAGCTACGTCCGATTTTATTGATTTGACAACATTCGACTTCCAAACTGGTCAGTTTAATATACTGGCTAAACGCCCAAGAAAACAGCAAACCAAGCCAGTAACTCCTGCTCCAACTCCGACCCCTCcttccaataataataataccggACCAAGTTCAAATAATACATCATTTGATTACAGGAGTAATATGAGGAATGATACATGCTTAGTACCTCCTATACGACAGACTGCTTCTATATTCAAACAACCTGTAACTGTTTATAAAACTCAAGAAAGTAAAGTCAAAGCTGATTTTAAGCATGGACCTCAAGAAAAACCTAGACAGttattttGGGAGAAAAGGTTAGAAGGTCTAAAAGTATCTAATACAGATAATGAAAGTTTAGATTTTATGGATTTGCCCGATGCTATAAGGCCCGTAGGACCTATGATTACAGAAGAAACGTGTCTTAGATCATTAGCAACTTCTCTCCATGTCTCTGGGAATCCAATTACTGGTCAAGTTAATCATAAAGGCTCCCTTGATAAGAATCCTGGTGTCTTTACTAATCCGGATCAACCACTTATTCAGACAAGAAGTTCCAGGAAAACGGTAGAACCTGAGCTAGGGACCGAAACTAATGACTTCTTTAAAGCATTGCTGGAGCAAAACAAACAACTTCAGGAAGCTGTCGCTCTATTGATAAATGCTCAAACGATTACAACTCTGTCTAAGGAGGAAGGAAGTAGATCACAGGCTAGTACGTCCCGCGGTATATTGGGGCTCTCATTTGACAAGTATGACGATCAGGTAGAAACATTTGAAACTTATTTAGAGAGATTCACGGCTTATTTAGACATACAAAATGTTTCAGATTGTATGCGGCCTAAAGCTCTCGTAACAGTGTTGAGTCCTGAAATGTTTACCTTGCTAAAGAGTCTTCTGTTTCCTGAGACGtatgaaaataaatcttttcaagatttaaagaacATATTAGTCAAACATCTACATCCAAAACCCTTAGTAATTCCTAGTCGTTATGCCTTGGTTAATAGAAAGCAGCGAGAAGGCGAGTCGATCTCTCAATACCTTACTGAACTAAGGAAGATGGCTTCGATCTGCGAGTACCCAGAGAACATGTTGCCTATAGTTCTAAGAGATGTGTTTGTTAGAGGAATAAGATCTAAACACATACTAGACCGACTTTTTGAGGAAGATGATATTCCTTTAGCTCGTACCGTACAAATTGCTGAAGCAATAGAGCGAGCTTCGATCAATTCTGATTTGTTGTTAAGATCTaaccaaacaaaacaatacagcATATCTAGTTGTAATCAAGATGAAGCCTCAACCACATCATGTAATAAGGTAGATCCCGAAAAAcgtgtaaacaataaaataatttgtttccgTTGTGGTGCTTCACATTTATCTCGTGAGTGTAAGGAAAAgaatttgaaatgtaatttcTGCAAACGAAAAAATCACTTAGAAATAGTctgcaaaattaaaaagacaCAAATGAAGAAATCTACAAATATTCGAAGGATGGTAGGCAATATAGATCAAGAGGATGAAAGATCTCGGTACAGCTCTAGAGAGAGCGTACACAGTGTTGAAAGTACGCTGCCTGTTCCTTTGAGACAAGTTGAGACCTCTCAATCTGTAGGTAAACGAGATAGGCAATCAGCGTTACCGTGTTGA
- Protein Sequence
- MSVDKRRFDCSALPKGWQREEITRKTGLSAGKVDVSYYSPEGERIATKPQLVRATSDFIDLTTFDFQTGQFNILAKRPRKQQTKPVTPAPTPTPPSNNNNTGPSSNNTSFDYRSNMRNDTCLVPPIRQTASIFKQPVTVYKTQESKVKADFKHGPQEKPRQLFWEKRLEGLKVSNTDNESLDFMDLPDAIRPVGPMITEETCLRSLATSLHVSGNPITGQVNHKGSLDKNPGVFTNPDQPLIQTRSSRKTVEPELGTETNDFFKALLEQNKQLQEAVALLINAQTITTLSKEEGSRSQASTSRGILGLSFDKYDDQVETFETYLERFTAYLDIQNVSDCMRPKALVTVLSPEMFTLLKSLLFPETYENKSFQDLKNILVKHLHPKPLVIPSRYALVNRKQREGESISQYLTELRKMASICEYPENMLPIVLRDVFVRGIRSKHILDRLFEEDDIPLARTVQIAEAIERASINSDLLLRSNQTKQYSISSCNQDEASTTSCNKVDPEKRVNNKIICFRCGASHLSRECKEKNLKCNFCKRKNHLEIVCKIKKTQMKKSTNIRRMVGNIDQEDERSRYSSRESVHSVESTLPVPLRQVETSQSVGKRDRQSALPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -