Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0011 2.3 9.3 1.2 6 43 10 44 8 45 0.90

2 10 0.085 1.9e+02 3.2 0.2 33 44 63 74 47 74 0.71

3 10 0.021 47 5.1 0.1 19 44 81 103 76 103 0.78

4 10 0.027 58 4.8 0.6 2 42 93 130 91 132 0.77

5 10 0.019 41 5.3 0.5 5 43 125 160 122 161 0.86

6 10 0.0011 2.4 9.2 3.0 6 43 155 189 151 190 0.86

7 10 0.00086 1.9 9.6 2.0 5 43 183 218 183 219 0.92

8 10 0.0031 6.8 7.8 0.2 15 44 222 248 220 248 0.90

9 10 0.77 1.7e+03 0.2 0.1 35 43 268 276 255 277 0.89

10 10 0.0015 3.3 8.8 2.6 5 43 270 305 266 306 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0011	2.3	9.3	1.2	6	43	10	44	8	45	0.90
2	10	0.085	1.9e+02	3.2	0.2	33	44	63	74	47	74	0.71
3	10	0.021	47	5.1	0.1	19	44	81	103	76	103	0.78
4	10	0.027	58	4.8	0.6	2	42	93	130	91	132	0.77
5	10	0.019	41	5.3	0.5	5	43	125	160	122	161	0.86
6	10	0.0011	2.4	9.2	3.0	6	43	155	189	151	190	0.86
7	10	0.00086	1.9	9.6	2.0	5	43	183	218	183	219	0.92
8	10	0.0031	6.8	7.8	0.2	15	44	222	248	220	248	0.90
9	10	0.77	1.7e+03	0.2	0.1	35	43	268	276	255	277	0.89
10	10	0.0015	3.3	8.8	2.6	5	43	270	305	266	306	0.89

Coding Sequence: ATGGAGCAAACGTCATCATCAAGTGCGTATTGTAATGATATCCCAGGCAAATTGAAGAAACACGTATGCGTAGAATGCAACAAGGCATTTGGGAAGAATTCCAATTTGGAGAGACACGTGAAGAGTGTGCATTACAAATTGGAAACATTGGTGTGCCAAGAGTGCGATGTTGCGTTTTCCGACCGGGGATGCCTGAAAAGGCATATCAATGTAGTACATCGCAACATGAAAACATTCTCATGCGAGGAGTGTGATCGCGCGTTTGGCCGATCTTCTGACTTAAAGCGACATTTGGACAACGTTCATCGGAAGTTGAAGAGATTCGTTTGCGGCGAATGTGATGGCGCGTTTACGGGGAAAGAGGGTTTGGAGAAACACGTGGAGATTGTGCACCGCAAGGTGAAGAATTTCGAGTGTACTGAATGCGGTCGAGCGTTCGGGCGACAAGGCGACTTAAAAACGCATTTGGAAGCGGTGCATTTCAAAGTTAAGAAATTCACGTGCAACATGTGCGACTGTGCTTTCGGGCGGCGAACTGGCTTAACGAAACATATCCAAGCCGTACATTTAAAATTGAAAGAGTTCACCTGTGCGGAATGCGACAGGGCGTTCGGAGGGCAGAACAATCTAAAGAGGCACATAGAGACTGTACATCACAGGGTGAATAAATTCATGTGCGCGATCTGTGACGGTGTTTTTGCTGAGAAACAACGCCTAAGACGACACATAGAGAGCGTTCATAATAAAGTGAGACGGTTCGTTTGCACGGATTGCCTCCGCGCTTTTACACTGGAAGAGAGCCTGCGACGACATTTATATGCAGTTCATCTCAAGATGAAAGATTTCTTGTGCGGCGAATGCGATCGTTCCTTTTCAAGAAGAAATGCATTAATACAACATCTAAAGACAGCACACGCTTAA
Protein Sequence: MEQTSSSSAYCNDIPGKLKKHVCVECNKAFGKNSNLERHVKSVHYKLETLVCQECDVAFSDRGCLKRHINVVHRNMKTFSCEECDRAFGRSSDLKRHLDNVHRKLKRFVCGECDGAFTGKEGLEKHVEIVHRKVKNFECTECGRAFGRQGDLKTHLEAVHFKVKKFTCNMCDCAFGRRTGLTKHIQAVHLKLKEFTCAECDRAFGGQNNLKRHIETVHHRVNKFMCAICDGVFAEKQRLRRHIESVHNKVRRFVCTDCLRAFTLEESLRRHLYAVHLKMKDFLCGECDRSFSRRNALIQHLKTAHA

Sequence clustering based on sequence similarity using MMseqs2