Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0018 1.8 9.8 1.4 6 43 9 43 8 44 0.93

2 9 0.13 1.3e+02 3.9 0.1 18 44 50 73 46 73 0.77

3 9 0.039 37 5.6 0.1 19 44 80 102 75 103 0.81

4 9 0.1 96 4.3 0.5 2 42 92 129 91 131 0.78

5 9 0.047 45 5.3 0.5 5 43 124 159 122 160 0.85

6 9 0.0018 1.8 9.8 3.1 6 43 154 188 150 189 0.86

7 9 0.0062 6 8.1 2.9 5 43 182 217 182 218 0.90

8 9 0.0017 1.7 9.9 0.9 14 44 220 247 217 247 0.92

9 9 0.00029 0.28 12.4 1.8 5 43 269 304 265 305 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0018	1.8	9.8	1.4	6	43	9	43	8	44	0.93
2	9	0.13	1.3e+02	3.9	0.1	18	44	50	73	46	73	0.77
3	9	0.039	37	5.6	0.1	19	44	80	102	75	103	0.81
4	9	0.1	96	4.3	0.5	2	42	92	129	91	131	0.78
5	9	0.047	45	5.3	0.5	5	43	124	159	122	160	0.85
6	9	0.0018	1.8	9.8	3.1	6	43	154	188	150	189	0.86
7	9	0.0062	6	8.1	2.9	5	43	182	217	182	218	0.90
8	9	0.0017	1.7	9.9	0.9	14	44	220	247	217	247	0.92
9	9	0.00029	0.28	12.4	1.8	5	43	269	304	265	305	0.93

Coding Sequence: ATGGAGCAAGCGTCATCGAGTGAGTATTGCGATGATATCCCTAGCAAATCGAAGAGACATATATGCGTCGAATGCAACAAGGCATTCGGGAAGAATTCCAATTTGGAAAGACACGTGAAGAGCGTACACTACAAATTGGATACGTTGGTGTGTCAAGAGTGCGACGTTGCGTTTTCCGATGGGGGATGCCTGAAGAGGCACATCAATGTCGTACATCGGAATATGAAGACTTTCGCCTGCGGGGAGTGCGACCGCGCGTTTGGGCGTTCCTCGGATTTAAAGCGACATTTGGACAACGTTCATCGGAAGTTGAAGAGGTTTGTTTGCGAGGAATGCGACGGTGCGTTCACAGGGAAGGAGGGTTTGGAGAAGCACGTGGAGATTGTGCACCGCAAGGTGAAGAATTTCGAGTGCACTGAGTGCGGTCGCGCGTTCGGGCGACAAGGCGACTTAAAGACGCATTTAGAAGCGGTGCATTTCAAAGTGAAGAAATTCACGTGCAACATGTGCGACTGCGCGTTCGGACGGCGAACCGGCCTAACGAAACACATCCGAGCGgtacatttaaaaatgaaagaGTTCACCTGTGCGGAATGCGACAGGGCATTCGGCGGGCAGAACAATCTAAAGAGGCACATAGAGACGGTGCATCACAGGCTGAATAAGTTCGTCTGCGCGATCTGCGACGGGGTCTTCGCTGAGAAACAACGTCTGAGACGTCACATAGAGAGCGTGCATAACAAAGTGAGACGGTTCGTTTGCACGGATTGCCTCCGCGCTTTTACACTTGAAGAGAGCCTGCGACGACATTTATACGCAGTTCATCTCAAGAAGAAAGATTTCTTGTGCGGCGACTGTGATCGTTCGTTTTCTAGAAGAAGTGCATTAATACAACATCTAAAGACAGCACACACTTAA
Protein Sequence: MEQASSSEYCDDIPSKSKRHICVECNKAFGKNSNLERHVKSVHYKLDTLVCQECDVAFSDGGCLKRHINVVHRNMKTFACGECDRAFGRSSDLKRHLDNVHRKLKRFVCEECDGAFTGKEGLEKHVEIVHRKVKNFECTECGRAFGRQGDLKTHLEAVHFKVKKFTCNMCDCAFGRRTGLTKHIRAVHLKMKEFTCAECDRAFGGQNNLKRHIETVHHRLNKFVCAICDGVFAEKQRLRRHIESVHNKVRRFVCTDCLRAFTLEESLRRHLYAVHLKKKDFLCGDCDRSFSRRSALIQHLKTAHT

Sequence clustering based on sequence similarity using MMseqs2