Mfac009174.1
Basic Information
- Insect
- Micropterix facetella
- Gene Symbol
- Mbd3
- Assembly
- GCA_027564375.1
- Location
- JAOPUG010000010.1:23444198-23452753[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-27 9.3e-23 80.7 0.1 2 74 6 73 5 76 0.94 2 2 0.00011 1.4 9.6 0.1 26 76 87 150 75 151 0.82
Sequence Information
- Coding Sequence
- ATGAATCTGCCCGCGGAAAAAAAGAAGGCCGACTGTCCGACGCTGCCGAAGGGATGGCAAAGGGAGGAAGTACTTCGCAGGTGTGGATTATCTGCCGGAAAAGTGGATGTTTATTATTATAGCCCGACGGGTAAGAAGATTCGCAGCAAACCACAGTTGGTGCGGTACCTCGGTGACTCCGTCGATCTTTCTACCTTCGATTTTCAGCAGGGGCAGACCAGCTCACTGATGCTTCGGAAGACTAAGAAACCGAAGGGCACGCAGTTTGATTACAGTCGAGGAGTGAGATCAGACGCATCTCTCGTACCGCCAATTCGGCAAACAGCTTCAATTTTTAAGCAGCCGGTCACCGTCTACAAGACACAGGATAGCAAGACTAAATCCGACTTCAAATATGGCATTCAGGAGAAACCCAAGCAGCTCTTCTGGGAGAAGAGACTAGAGGTTGGATCAACTCACGGTTCAACCCCTATCCGAGAGCCTCCTCGCAGAAGGACTAATGATCCGTTGGCCATCCGATCCCGAGTGATACTGACGGGCAAAGGATGCCTCGGATCCGCGATATATTGGAGTCATGAATTACCGCTTACATCCGATGGAGAACGCGCAAGCGACTTTAAATCCTTCCCAATCTGGATGGAGAATTCCATCCAAATCTGA
- Protein Sequence
- MNLPAEKKKADCPTLPKGWQREEVLRRCGLSAGKVDVYYYSPTGKKIRSKPQLVRYLGDSVDLSTFDFQQGQTSSLMLRKTKKPKGTQFDYSRGVRSDASLVPPIRQTASIFKQPVTVYKTQDSKTKSDFKYGIQEKPKQLFWEKRLEVGSTHGSTPIREPPRRRTNDPLAIRSRVILTGKGCLGSAIYWSHELPLTSDGERASDFKSFPIWMENSIQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -