Mmed006002.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056846.1:25911297-25913771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 2.1e+02 3.6 0.1 2 13 10 21 9 23 0.89 2 14 3.7 5.3e+02 2.3 0.2 3 17 64 78 62 79 0.84 3 14 0.00011 0.016 16.6 0.1 1 23 248 270 248 270 0.96 4 14 0.00016 0.023 16.1 1.7 1 23 278 300 278 300 0.98 5 14 4.7e-05 0.0068 17.8 0.5 2 23 308 329 307 329 0.97 6 14 6.1e-06 0.00087 20.6 1.9 1 23 335 357 335 357 0.99 7 14 0.00028 0.04 15.3 1.9 1 23 364 386 364 386 0.98 8 14 1.9e-05 0.0027 19.0 0.9 1 23 392 414 392 414 0.95 9 14 1.3e-06 0.00018 22.7 0.5 1 23 420 442 420 442 0.99 10 14 1.4e-07 1.9e-05 25.8 1.1 1 23 448 471 448 471 0.96 11 14 6.5e-06 0.00093 20.5 0.8 1 23 477 500 477 500 0.96 12 14 1.9e-05 0.0027 19.0 2.0 1 23 506 528 506 528 0.99 13 14 1.4e-05 0.002 19.4 0.8 1 23 534 556 534 556 0.97 14 14 0.001 0.15 13.5 0.1 1 22 562 583 562 586 0.91
Sequence Information
- Coding Sequence
- ATGACGGAGTCTGTGAAGGAGGTGCTGTACTGTTTGATATGTAATATTAAGTTCAGCACATCAACAAGAAatagtattaaaatatttgacaaaaattcaGTATGTGATTCCCAGAAGACTATCTTGTCAGCTCTTAATTTAGTGTTAGAGACTGAAGTCACCGCAGAGAATGTGCATTCGGatgtaatttgtaaaaaatgttataaattatttaatgagTATGATGAACTTACTAATAGATTAGCAGAGATAAAGCACGACATCTTtgagaattacaaaaaaacggTTAGAAAACTCACTGAAATCGTTGAAGAAGAGTACAATGACCACGATTATGTAGATCATGACAACCAAAATCTAGAAGAATTTTCTCCGGGTGTACTTGACGAGGATGGAGATAAACCCAAGGACAGTTTCGCTAAAGAAGAGCACGTCAATATTGAGTATTTACATGAAGACATTAACCAAGACGAGGAAAATGTAGTCAATGAAGAGTACATCGATGATCCACCTGAGAAACCTGATGTCAAACAAATAGCGATGACTACCTCCATGGAGGCTAAGACTAATgaaacgattaaaaaaatcaagagTCTGAAAGTCGATGGGCAGGAAGCTTTAGTAATTCGTGATAAAAGTACTAATATTTATACTTGTCTGCTTTGTCCTGATGATGATCGTATTGCTGGAGATGCTCGTGAAATAGTAGCGCATTTGAAGGCATCTCACGATGTGCGGCTGTACATTTGTGACATGTGCGGcgcggaatttaaaaaacggaaTGAACTGTCCGCGCACATGGATGAACATATTGCCAAGGAAGAGGGAGATTTCCAGTGTGAATCTTGCAACAGAATATTCTCCAATTTGCGATTATTTAGAATTCACAAGCGCGTTCATTATCCGCAAGCTAAATCATGGAGTTGTGATCTGTGCCCCAAAAAATACAGCTCGAAAAATTTGCTGGAAGAGCACCGTAACACTCATACGGGAAACAGACCTTACGTTTGTAAAGTTTGTAAAAAAGATTTTGCATCAAAGTACACATTTAAAGCGCACGTTAAAACCCACGAGATACGCCCGCGACCATTTGAATGCTTACAATGtagtaaaacatttttaagCCAACAAAATTTGACTCAGCATGAACGAACTCACTTGGGTATAAAAGAATACGTTTGCGACCACTGCGGCAAAGCCTTTGGCTCCCAGCACAACCTAGATGTCCACAATATTGTCCACACCGGCCACAAGCCCTACGTCTGCGACCACTGCGGCAAAGCCTTTGCCAGGAAAGCCGAGATAAGGGACCACGAGAGAACGCACACGGGTGAAAAACCTTATCAGTGTGAGTATTGCGGTGCGACCTTTAGTCAGCGATCTAATTTGCAGTCCCACAAACGCGCTACGCACTACAATGACAAGCGTTACAAGTGCGATGAGTGCGGCAAAGGTTTCAAACGAAGAAGACTTCTTGACTATCACATAAAAGCTCAGCACACCGGCGAAAGACCTTTCAAATGTGAAACATGCGCAGCTACTTTCGTTTATCCAGAACACTTCAAGAAGCACATGCGGATCCACACTGGAGAGAAACCTTATCAGTGCGAGGTCTGTGGCAAAGCCTTCAACAGTCGGGATAATCGCAACTCCCATCGCTTTGTCCACAGCGACAAAAAACCTTACGAGTGTTTGGTTTGCGGGATGGGTTTCATGCGCAAACCTCTTCTGTACACTCACATGCAGAACTCGGGACATTTGAATGACACCATTGTCGTTAACCAACCGAGACTGACCACTACTGGAGATCAAGTTATAACTATTCCTGAAGGAGCTCAGTTGTTGATTAACAGCGAGCAAGAAGACGatgAGATAGAGGAAACTGAATTGTATGTAACGGATATCAAAGACCATGTCATTATTCAAGAAGACGatgaaaatatttacgaaGAAGAGGAAGCTGTTCTTGACATTCCTTCAGATGCTAACATCACTTCAGACCAAGTCAATATTGTTGTTAATAATCAGattGCATTTGCTGATGGTGAAATGATTGAATGCAAAACAGAGGATCCTGAAGAAGACTCGGAGATGTACAGTTACAATACTGACGACGGGGAAACGATTGTCGTGCCCGCAAACGAGTACAAAAATCTCATTAGCAACAACAAGGGCCCGGTCCGGTTGGTCCAGATGAGAATTCTGTCTGGTGCTGGAGGTGATGGAAAAAGCTGGCTCAGTCTGGTTCAACAAGATCCATAA
- Protein Sequence
- MTESVKEVLYCLICNIKFSTSTRNSIKIFDKNSVCDSQKTILSALNLVLETEVTAENVHSDVICKKCYKLFNEYDELTNRLAEIKHDIFENYKKTVRKLTEIVEEEYNDHDYVDHDNQNLEEFSPGVLDEDGDKPKDSFAKEEHVNIEYLHEDINQDEENVVNEEYIDDPPEKPDVKQIAMTTSMEAKTNETIKKIKSLKVDGQEALVIRDKSTNIYTCLLCPDDDRIAGDAREIVAHLKASHDVRLYICDMCGAEFKKRNELSAHMDEHIAKEEGDFQCESCNRIFSNLRLFRIHKRVHYPQAKSWSCDLCPKKYSSKNLLEEHRNTHTGNRPYVCKVCKKDFASKYTFKAHVKTHEIRPRPFECLQCSKTFLSQQNLTQHERTHLGIKEYVCDHCGKAFGSQHNLDVHNIVHTGHKPYVCDHCGKAFARKAEIRDHERTHTGEKPYQCEYCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAQHTGERPFKCETCAATFVYPEHFKKHMRIHTGEKPYQCEVCGKAFNSRDNRNSHRFVHSDKKPYECLVCGMGFMRKPLLYTHMQNSGHLNDTIVVNQPRLTTTGDQVITIPEGAQLLINSEQEDDEIEETELYVTDIKDHVIIQEDDENIYEEEEAVLDIPSDANITSDQVNIVVNNQIAFADGEMIECKTEDPEEDSEMYSYNTDDGETIVVPANEYKNLISNNKGPVRLVQMRILSGAGGDGKSWLSLVQQDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01003726;
- 90% Identity
- iTF_01005463;
- 80% Identity
- -