Mdem009246.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- -
- Assembly
- GCA_000572035.2
- Location
- NW:1841786-1845265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 1.1e+02 2.9 0.2 3 13 11 21 9 23 0.89 2 14 2.4 1.7e+02 2.3 0.2 3 17 64 78 62 79 0.84 3 14 6.9e-05 0.0049 16.6 0.1 1 23 247 269 247 269 0.96 4 14 0.0001 0.0073 16.1 1.7 1 23 277 299 277 299 0.98 5 14 5e-06 0.00036 20.2 0.9 2 23 307 328 306 328 0.97 6 14 6.8e-06 0.00049 19.8 1.8 1 23 334 356 334 356 0.98 7 14 8.1e-05 0.0057 16.4 2.1 1 23 363 385 363 385 0.98 8 14 4.3e-06 0.00031 20.4 1.2 1 23 391 413 391 413 0.96 9 14 8e-07 5.7e-05 22.7 0.5 1 23 419 441 419 441 0.99 10 14 4.1e-07 3e-05 23.6 1.2 1 23 447 470 447 470 0.96 11 14 2.9e-06 0.0002 21.0 0.9 1 23 476 499 476 499 0.96 12 14 4.6e-06 0.00033 20.3 2.8 1 23 505 527 505 527 0.99 13 14 9.2e-05 0.0066 16.2 0.7 1 23 533 555 533 555 0.94 14 14 0.00067 0.048 13.5 0.1 1 22 561 582 561 585 0.91
Sequence Information
- Coding Sequence
- ATGACGGAGCCTATGAAGGAGATGCTGTTCTGTTTGATATGTAACATCAAGTTCAGCACATCAACAAGaaatagtattaaaatatttgacaaaAGTTCAGTATGTGATTCGCAGAAGTCTATCTTGTCAGCTCTTAATTTAGTATTGGAGACCGAAGTCACCGCAGAGAATGTGCATTCGGatgtaatttgtaaaaaatgttataaattatttaatgagTATGATGAACTTACCAATAGATTAGCAGAGATAAAGCACGATATCTTTGAGACTTATAGAAAAACTGTTAAAAAACTCACTGAAGATGTTGAAGAAGAGTATAATGACCACGATTATGTGGATCATGACAGCCAAGACCTAGAAGAATTTTCCCCGGGTGTACTTGACGAGGATGGAGACAAACCTAAGGACAGTTTTCCTAAAGAAGAGCACGTTAATATTGAGTATTTACATGAAGACATTAACCAAGACGAGGAAAATGTCAATGAAGAGTACATTGATGATCCACCTGAGAAACCTGATATTAAACATATAGTCATATCTACTTCCGCGGAGGCTAAGACTAATGATgcgatcaaaaaaattaagaatctCAAATACAATGGACAGGAAGCTTTGGTAATTCGTGATAAAAGTACTAATCTTTATACTTGCCTGCTTTGTCCTGATGATGATCGCATTGCTGGAGATGCTCGTGAAATAGTAGCGCATTTGAAGGCATCTCATGATGTGCGGCTGTACATTTGTGACATGTGCGGcgcggaatttaaaaaacggaaTGAACTGTCTGCGCACATGGACGAACATATTGCCAAGGAAGAGGGAGATTTCCAGTGTGAATCTTGCAACAGAATATTCTCTAATCTGAGATTGTTTAGAATTCACAAGCGCGTTCATTATCCGCAAGCCAAATCATGGACGTGTGATCAGTGCGGTAAAAAATACAGCtcgaaaaatttgttggaagaGCACCGTAACACTCACACTGGACACAGACCTTACATTTGTAAAGTTTGTAAGAAAGATTTTGCATCAAAGTACACATTTAAAGCCCACGTTAAAACCCACGAGATACGCCCGCGACCGTTTGAATGCATGCAAtgcaataaaacatttttaagcCAACAAAATTTGACTCAGCATGAACGAACTCACTTGGGTATAAAAGAATTCGTTTGTCAACACTGCGGCAAAGCCTTTGGCTCCCAGCACAACCTAGAGGTCCACAATATTGTCCACACCGGCCACAAGCCCTACGTCTGCGACCACTGCGGCAAAGCGTTTGCCAGGAAAGCCGAGATAAGGGACCACGAGAGAACGCATACTGGTGAAAAACCTTATCAGTGTGAGTTTTGCGGCGCGACCTTTAGTCAGCGATCTAACTTGCAGTCCCACAAACGCGCTACGCACTACAATGACAAGCGTTACAAGTGCGATGACTGCGGCAAAGGTTTCAAACGACGAAGACTTCTTGACTATCATATCAAAGCTCAGCATACCGGCGAAAGACCTTTCAAATGTGAAACATGCTCAGCTACTTTCGTTTATCCAGAACACTTCAAGAAGCACATGCGGATCCATACTGGAGAGAAACCTTATCTGTGTGAGGTCTGCGGCAAGGCCTTCAACAGTCGGGATAATCGCAACTCCCATCGCTTTATCCACAGCGATAAAAAACCTTATGAGTGTTTGGTTTGCGGGATGGGTTTCATGCGCAAACCTCTTCTGTACACTCACATGCAGAACTCGGGACATTTGAATGATACCATTGTCGTTAACCAACCGAGACTGACTACTACTGGAGATCAAGTTATAACTATTCCTGAAGGCACTCAGTTGCTGATCAACAGCGAACAGGAAGAAGATGAGATGGAAGAAACTGAATTATATGTAACGGATATGAAAGACCATGTTATTATCCAAGAAgaagatgaaaatatttacgaaGAAGAGGAAGCTGTTCTTGACATTCCTTCGGAAGCTAACATCACTTCAGACCAAGTCGACATTGTTGTTAATAATCAgatTGCATTTGCTGATGGTGAAATGATTGAATGCAAAACAGAGGATCCGGAAGAAGACTCGGAAATGTACAGTTACAATACTGACGACGGGGAAACAATTGTCGTACCGGCTAATGAGTACAAAAATCTCATTAGCAACAACAAGGGCCCGGTCCGGTTGGTCCAGATGAGAATTTTATCTGGTGCTGGAGGTGATGGAAAAAGCTGGCTCAGTCTGGTTCAACAAGATTCATAA
- Protein Sequence
- MTEPMKEMLFCLICNIKFSTSTRNSIKIFDKSSVCDSQKSILSALNLVLETEVTAENVHSDVICKKCYKLFNEYDELTNRLAEIKHDIFETYRKTVKKLTEDVEEEYNDHDYVDHDSQDLEEFSPGVLDEDGDKPKDSFPKEEHVNIEYLHEDINQDEENVNEEYIDDPPEKPDIKHIVISTSAEAKTNDAIKKIKNLKYNGQEALVIRDKSTNLYTCLLCPDDDRIAGDAREIVAHLKASHDVRLYICDMCGAEFKKRNELSAHMDEHIAKEEGDFQCESCNRIFSNLRLFRIHKRVHYPQAKSWTCDQCGKKYSSKNLLEEHRNTHTGHRPYICKVCKKDFASKYTFKAHVKTHEIRPRPFECMQCNKTFLSQQNLTQHERTHLGIKEFVCQHCGKAFGSQHNLEVHNIVHTGHKPYVCDHCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAQHTGERPFKCETCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNSHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQNSGHLNDTIVVNQPRLTTTGDQVITIPEGTQLLINSEQEEDEMEETELYVTDMKDHVIIQEEDENIYEEEEAVLDIPSEANITSDQVDIVVNNQIAFADGEMIECKTEDPEEDSEMYSYNTDDGETIVVPANEYKNLISNNKGPVRLVQMRILSGAGGDGKSWLSLVQQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01006483; iTF_01004520; iTF_01005463;
- 90% Identity
- iTF_01005463;
- 80% Identity
- -