Basic Information

Insect: Microplitis mediator
Gene Symbol: Gzf1
Assembly: GCA_029852145.1
Location: CM056854.1:3634732-3637408[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9 4.1e+02 2.7 0.5 1 11 59 69 59 73 0.86

2 18 0.078 11 7.6 0.1 2 23 91 113 90 113 0.90

3 18 0.035 5 8.7 2.8 1 23 118 141 118 141 0.97

4 18 0.016 2.3 9.8 1.0 3 23 191 212 190 212 0.96

5 18 3.1e-05 0.0044 18.3 0.5 3 23 219 239 219 239 0.99

6 18 1.3e-05 0.0019 19.5 0.8 3 23 251 272 249 272 0.95

7 18 1.8e-05 0.0026 19.1 4.4 2 23 279 300 279 300 0.98

8 18 1.2e-05 0.0017 19.6 0.2 1 23 306 328 306 328 0.98

9 18 0.83 1.2e+02 4.4 4.6 1 23 383 406 383 406 0.96

10 18 3.6e-06 0.00051 21.3 0.3 1 23 412 434 412 434 0.97

11 18 0.0012 0.17 13.4 5.2 1 23 440 462 440 462 0.98

12 18 0.0095 1.4 10.5 0.1 1 23 468 490 468 490 0.94

13 18 6.9e-05 0.0098 17.2 3.2 1 23 495 518 495 518 0.97

14 18 5.3e-05 0.0076 17.6 1.2 1 23 530 553 530 553 0.97

15 18 0.0015 0.21 13.1 0.2 1 23 561 583 561 583 0.96

16 18 2.8e-07 4e-05 24.8 1.3 2 23 590 611 589 611 0.97

17 18 1.6e-06 0.00023 22.4 0.1 1 23 617 639 617 639 0.98

18 18 7.6e-06 0.0011 20.2 0.4 3 23 647 667 645 667 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9	4.1e+02	2.7	0.5	1	11	59	69	59	73	0.86
2	18	0.078	11	7.6	0.1	2	23	91	113	90	113	0.90
3	18	0.035	5	8.7	2.8	1	23	118	141	118	141	0.97
4	18	0.016	2.3	9.8	1.0	3	23	191	212	190	212	0.96
5	18	3.1e-05	0.0044	18.3	0.5	3	23	219	239	219	239	0.99
6	18	1.3e-05	0.0019	19.5	0.8	3	23	251	272	249	272	0.95
7	18	1.8e-05	0.0026	19.1	4.4	2	23	279	300	279	300	0.98
8	18	1.2e-05	0.0017	19.6	0.2	1	23	306	328	306	328	0.98
9	18	0.83	1.2e+02	4.4	4.6	1	23	383	406	383	406	0.96
10	18	3.6e-06	0.00051	21.3	0.3	1	23	412	434	412	434	0.97
11	18	0.0012	0.17	13.4	5.2	1	23	440	462	440	462	0.98
12	18	0.0095	1.4	10.5	0.1	1	23	468	490	468	490	0.94
13	18	6.9e-05	0.0098	17.2	3.2	1	23	495	518	495	518	0.97
14	18	5.3e-05	0.0076	17.6	1.2	1	23	530	553	530	553	0.97
15	18	0.0015	0.21	13.1	0.2	1	23	561	583	561	583	0.96
16	18	2.8e-07	4e-05	24.8	1.3	2	23	590	611	589	611	0.97
17	18	1.6e-06	0.00023	22.4	0.1	1	23	617	639	617	639	0.98
18	18	7.6e-06	0.0011	20.2	0.4	3	23	647	667	645	667	0.97

Sequence Information

Coding Sequence: ATGCCGGCgtcATGCGTAAAGATTGTGGACTCTACTAGAGTTAAGGTTCTGAGCTCAACAAGAGTTAAAATACTCAAGCTGCCGAAGGATGAGACCGGGAAATTAAACGGATGTAAGCCCAAGACCCCGGtggttaataaaaattcggtTATTGCGAAGGAGCCACTATTGAAGTACTATTGCAAAAGTTGCGGATATATTTACTCAGGGCGAGCAAGTGACCCGCAGACGGAAGTGTTCAAGCGAATGCATTCGAAGAAACACTTCACCAAGTGCCTGCAATGCCCAGAGACATTTGCGTTGGCCAGAGATTATCTGAAGCATGTGGACGAGGCCCACGAGCTCAAGTATTACAAGTGCGAGCAGTGCTGGTACCGGACGACGAGTATCCGGCAGTTTGAGAGCCACAAGAAATCTAGACACAGGCAAGTTTTGATGCAGGAGAAGAAGTACTCCTGTGGTAGGTGTTTGAAAAGGAACATGACCCATTCCCAGCACCAGAGTCACCTGTGCTCGGAAGACGACATTGCAAAAAAACGGGAGAAAGACAAGGAAGGAGAGATTTCGCTGTGCGAGTTCTGCGGCTACACGTCGCGGAATAAAAAGTCGATCAAGTTACACATAAACCAGTATCACGCTGAGCGTAACATTGGGTGCAATATCTGCGACAAGAAGTTCACCAGCGAGCAGGGGCTGATAATGCACATGAACTACCACAAGAATCCGGTGGTCAAAGTCGGCAAGCTCTTCTGCGACCACTGCGGCAAAGGTTTCAAGGACAAGCCGGCTCTGAGGTTGCACATCATGAACACCCACATGGGCATGAAGCTGGCCAAGTGTTCAATTTGCCACAAGTCCTTCGCCAAGAAGACGACGCTGAGGCAGCACTTGCTTACCCACAGCGGCAAGCGCCCGTACACTTGTGATATCTGCGGAAAAACTTTTGTCCAGATACCTGCGCTCAGTAGCCACCGCAAACAACACCCTGGAAAGCTTCCGCCCATGCCTGTAGTTTATATTGATTCTTACATACGAGAGCTTGATCCCTCGATGGTCACTTCCTCGATTGTCCCGGTTCCGAAACTCAGAACAGAatGTCAAGGGTTTCAGCGGATAAATCCTAAAGGGAAAAAATCTAAAGATCCACACAAGTGTGTCAAGTGCGACGCGTATTTTTTCCACATGACTAAGCTAGTCGAGCATTTGAAGAATACTCATGGCATTGAGAACGCTTTCAGCTGCGACGAGTGCGGGAAATCCTTCAAAAGTCCCATGAATATCGCGCGGCACAAATTGATCCACTCGGGgcttaaaaaattctcttgcgaCGTCTGCGAGTACTCGTGCCACCAGAAGGCCAATTTAGAAACGCACAAACGGAGACACGCGCAAGATTATGCGTTCAAATGCGGCGTTTGCAAAAAAGGTTTTATCGCTAAAGCGGATTTTCTCGAGCACGAAATCTTGCACACGAACGTTAAGTTCCGCTGCGAGgtctgcaataaaaattattcttacaAGCGAAATCTGGATGCGCACTTGAGGCTCTGCCACTACGAGCTGAGGAAAATGAATAAGACCAGCCAGTACAATTGTAACGAGTGCAAAGTGGCCTTCGCGACCCTCAGAACGCTCAAGAATCACCAGCGGAATCGTCACCGCGTTAAGAAGCGGCAAGAATATCTCTGTGACCTCTGCGGCGCGAAGGTATCCTCGAAAAAAGCTCTCGATATTCACACGCGGACGCACACCGGAGAGAGGAACGTCAGTTGCGATTTATGCCCGAAAAAATTCACCACCAAAGAGAACCTTAAAATTCACAGGAGAACTCACACGGGAGAGAAACCGTATGTGTGCAACGAATGCGGTAAAGAATTTGCCCAGAGGTCTCCGCTGGTAATTCATTTGCGTTATCACAACGGCGAGACTCCATACTGGTGCCCAGAATGTGGCAGAGGTTTTGTCACCAATAGTTTTCTCCAAAAACATCGAAAAGATCACGTTGTCGCTCCGCACTTCAAATACGAGCAGCCGCTTCGTTCTaaatctttaaaataa
Protein Sequence: MPASCVKIVDSTRVKVLSSTRVKILKLPKDETGKLNGCKPKTPVVNKNSVIAKEPLLKYYCKSCGYIYSGRASDPQTEVFKRMHSKKHFTKCLQCPETFALARDYLKHVDEAHELKYYKCEQCWYRTTSIRQFESHKKSRHRQVLMQEKKYSCGRCLKRNMTHSQHQSHLCSEDDIAKKREKDKEGEISLCEFCGYTSRNKKSIKLHINQYHAERNIGCNICDKKFTSEQGLIMHMNYHKNPVVKVGKLFCDHCGKGFKDKPALRLHIMNTHMGMKLAKCSICHKSFAKKTTLRQHLLTHSGKRPYTCDICGKTFVQIPALSSHRKQHPGKLPPMPVVYIDSYIRELDPSMVTSSIVPVPKLRTECQGFQRINPKGKKSKDPHKCVKCDAYFFHMTKLVEHLKNTHGIENAFSCDECGKSFKSPMNIARHKLIHSGLKKFSCDVCEYSCHQKANLETHKRRHAQDYAFKCGVCKKGFIAKADFLEHEILHTNVKFRCEVCNKNYSYKRNLDAHLRLCHYELRKMNKTSQYNCNECKVAFATLRTLKNHQRNRHRVKKRQEYLCDLCGAKVSSKKALDIHTRTHTGERNVSCDLCPKKFTTKENLKIHRRTHTGEKPYVCNECGKEFAQRSPLVIHLRYHNGETPYWCPECGRGFVTNSFLQKHRKDHVVAPHFKYEQPLRSKSLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01004515; iTF_01005459;
90% Identity: iTF_01004515; iTF_01005459;
80% Identity: -