Mman000180.1
Basic Information
- Insect
- Microplitis manilae
- Gene Symbol
- Gzf1_1
- Assembly
- GCA_030273425.1
- Location
- CP092720.1:1194512-1197212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.3 5.1e+02 2.5 0.3 1 11 80 90 80 94 0.86 2 18 0.064 9.9 7.9 0.1 2 23 112 134 111 134 0.90 3 18 0.0046 0.71 11.5 3.1 1 23 139 162 139 162 0.98 4 18 0.026 4.1 9.1 1.5 3 23 212 233 211 233 0.96 5 18 0.012 1.8 10.3 1.5 3 21 240 258 238 260 0.95 6 18 3.1e-05 0.0048 18.3 0.9 3 23 272 293 270 293 0.95 7 18 1.9e-05 0.003 19.0 4.4 2 23 300 321 300 321 0.98 8 18 1.3e-05 0.002 19.6 0.2 1 23 327 349 327 349 0.98 9 18 0.88 1.4e+02 4.4 4.6 1 23 404 427 404 427 0.96 10 18 5.9e-06 0.00092 20.6 0.3 1 23 433 455 433 455 0.97 11 18 0.0012 0.19 13.3 5.2 1 23 461 483 461 483 0.98 12 18 0.00058 0.089 14.4 0.2 1 23 489 511 489 511 0.95 13 18 1.1e-05 0.0017 19.8 3.2 1 23 516 539 516 539 0.97 14 18 7.5e-05 0.012 17.2 1.3 1 23 551 574 551 574 0.97 15 18 0.0016 0.24 13.0 0.2 1 23 582 604 582 604 0.96 16 18 3e-07 4.6e-05 24.7 1.3 2 23 611 632 610 632 0.97 17 18 1.7e-06 0.00026 22.3 0.1 1 23 638 660 638 660 0.98 18 18 8.1e-06 0.0013 20.2 0.4 3 23 668 688 666 688 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTTAGATTTTCAAGTACTGAAGCATTCGTAGGCAACAATGCCGGCgtcAGTCTCCAAGTAACTGGAGCATGCGTTAAAGTTGTGGATACTAGCAGAGTTGAGGTTCGGAGGTCAACGAGAATTAAAATACTCCAGCTGCCGAAGGATCCGACCGAGAATTCAAGCGGACGTAAGCCAAGGACTCCGgtggttaataaaaattcagttaCAGCGAAGGAGCCAATACTGAAGTACTATTGTAAGAGTTGCGGAGTTGTTTACTCAGGGCGAGCAAGTGACCCGCAGACGGAAGTGTTCAAGCGAATGCATTCGAAGAAACACTTCACCAAGTGCCTGCAATGTCCAGAGACATTTGCGTTGGCGAAAGATTACCTGAAGCATGTGGACGAGGCCCACGAGCTCAAGTACTACAAGTGCGAGTACTGCTGGTACCGGACGACGAGTGTCCGGCAGTATGAGAGCCATAAGAGAACTAAACACAGGCAAGTTTTTACGCAGGCGAAGAAGTTCTCCTGCGGGAAGTGTTTGAAAAAGGACATGACCCATTCTCAGTACCAGATCCACCTGTGCGAGGAAGACGACATTGCAAGAAAACGAGAGAAAGACAAGGAGGGAGAGATTCTGCTGTGCGAGTTCTGCGGCTACACGTCGCGGAAGAAAAGGTCGATGAAGTTGCACATAAACCAGTACCACGCTGAGCGCAAGTTTGGGTGCAATATCTGCGAGAAGAAGTTCATCAGCGACCAGGGGCTGGTGAAGCACATGAACTGCCACAAGAACCCGGTGACCAGAGTCGGCAAACTCTTCTGCGACCACTGCGGCAGAGGTTTCAAGGACAAACCGGCTCTGAGGATGCACATCATGAACACCCACATGGGCATGAAGCTGGCCAAGTGTTCGATTTGCCACAAGTCCTTCGCCAAGAAGACGACGCTGAGGCAGCATTTGCTTACCCACAGCGGCAAGCGTCCGTACACTTGCGATATCTGCGGAAAAACTTTTGTCCAGATACCCGCGCTCAGTAGCCACCGGAAACAACACCCTGGAAAGCTTCCGCCCATGCCTGTAGTTTATATTGATTCCTACATACGCGAGCTTGATCCCTCGATGGTCACTTCCTCGATTGTCCCAGTTCCGAAGCTTAGGACAGAatGTCAAGGGTTTCAGCGGATAAATCCTAAAGGGAAAAAATCTAAAGATCCACACAAGTGTGTCAAGTGCGACGCGTATTTTTTCCACATGACTAAGCTAGTCGAGCATCTGAAGAATACTCACGGCATTGAGAACGCTTTCAACTGCGACGAGTGCGGGAAATCCTTCAAAAGTCCCATGAATATAGCGCGGCACAAATTGATCCACTCGGGGcttaaaaaattctcttgcGACGTCTGCGAGTACTCGTGCCACCAGAAGGCCAATTTAGAAACGCACAAACGGAGACACGCGCAAGATTATGCGTTCAAGTGCGGCGTTTGCAAAAAAGGCTTTGTCTCCAAAGCGGATTTTCTTGAGCACGAAATTTTGCACACGAACGTTAAGTTCCGCTGCGAGATCTGCAATAAAAGTTATTCTTACAAACGAAATCTGGATGCGCACTTGAGGCTCTGTCACTACGAGCTGAGGAAAATGAACAAGACGAGTCAGTACAATTGTACCGAGTGCAAGGTGGCCTTCGCGACCCTCAGAACGCTGAAGAATCACCAGCGAAATCGTCACCGCGTTAAGAAGCGGCAAGAATATCTCTGCGACCTCTGCGGCGCGAAAGTATCCTCGAAAAAAGCTCTCGATATTCACACGCGAACGCACACCGGTGAGAGAAACGTCAGTTGCGATTTATGCCCCAAAAAATTCACCACCAAAGAGAACCTTAAAATTCACAGACGAACGCACACGGGAGAGAAACCGTATGTGTGCAACGAATGCGGTAAAGAATTTGCTCAGAGGTCTCCGCTGGTAATTCATTTGCGTTATCACAACGGCGAGACTCCCTACTGGTGTCCAGAATGTGGCAGAGGTTTTGTCACCAATAGCTTTCTACAAAAGCATCGAAAAGATCAcgatatctcgaaaattgTCGTCCCGCGCTTCAAATACGAGCAGCCGCTTcattcttaa
- Protein Sequence
- MVFRFSSTEAFVGNNAGVSLQVTGACVKVVDTSRVEVRRSTRIKILQLPKDPTENSSGRKPRTPVVNKNSVTAKEPILKYYCKSCGVVYSGRASDPQTEVFKRMHSKKHFTKCLQCPETFALAKDYLKHVDEAHELKYYKCEYCWYRTTSVRQYESHKRTKHRQVFTQAKKFSCGKCLKKDMTHSQYQIHLCEEDDIARKREKDKEGEILLCEFCGYTSRKKRSMKLHINQYHAERKFGCNICEKKFISDQGLVKHMNCHKNPVTRVGKLFCDHCGRGFKDKPALRMHIMNTHMGMKLAKCSICHKSFAKKTTLRQHLLTHSGKRPYTCDICGKTFVQIPALSSHRKQHPGKLPPMPVVYIDSYIRELDPSMVTSSIVPVPKLRTECQGFQRINPKGKKSKDPHKCVKCDAYFFHMTKLVEHLKNTHGIENAFNCDECGKSFKSPMNIARHKLIHSGLKKFSCDVCEYSCHQKANLETHKRRHAQDYAFKCGVCKKGFVSKADFLEHEILHTNVKFRCEICNKSYSYKRNLDAHLRLCHYELRKMNKTSQYNCTECKVAFATLRTLKNHQRNRHRVKKRQEYLCDLCGAKVSSKKALDIHTRTHTGERNVSCDLCPKKFTTKENLKIHRRTHTGEKPYVCNECGKEFAQRSPLVIHLRYHNGETPYWCPECGRGFVTNSFLQKHRKDHDISKIVVPRFKYEQPLHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01006478;
- 90% Identity
- iTF_01006478;
- 80% Identity
- -