Basic Information

Gene Symbol
JARID2_1
Assembly
GCA_029852145.1
Location
CM056846.1:3669073-3675684[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.5e-23 2.1e-19 70.7 0.1 6 89 1357 1438 1353 1438 0.94

Sequence Information

Coding Sequence
ATGGTGTTGGGTAGaaatgataagagaaaaaGGAAAGTCGGTGACCTGGTTGATCTTATGGATCCACTTTCGGAGTCTCCTAAAAGAGCTAAAGTTCATGCCCAGAGAAAATTCGCTCAAGGATCAGCGACAGTGTTTACATCCCCTCAAACTTTAGttaaagagaaagaaaaacCTAAACCTGCTAAGGTTACTGAATTGATAACACATAAACGTCCTAATACTGAAGATTTTTTAACGTTTCTTTGTTTTAGAGGAACGTCGATATTACCACCgagtttagatttttttaatgttggGTTAAAGAAAGATAAAGCAGAATCAAAAACTAcatcaaaaaagttaaatagtACAAGTAATTCATCAACATTTACTCCGACACCGAGTACATCTGGAGTAGGATCAAAAGCAGTAACAAATCAAACTACAACAACTAAAGGAGCAGCAGGAAAAGTTGGTGATCCAGTGCGGAAAAAAGTTACGACAGAGATTCAAAAGCcagtaaataaattcaaatcagCGACATCGACGATTCAAGCGCTGAAGAAAAAGTACCAAGAGCAACGTCTAGCCAAACAGAGgatcgaaaataaattaaagaagaATTGTGTGATAAGAACACGGTCCACTGTAGGCAGACCTTTGTTGAAGACCGTTCACAAATTAGCACCTCGTAAATTTTTGCCGAGAGTTGAACCTAAAAGACACTGCCTACGAAGTAACACGACGTTGGAGAAACCGTTCAAAGCTTTCGGgaaatctaaaataatttcagcGTCAAAGGGAACGGCGAAGAAACGAGCGGTGCTGAAAGAACAGAGCAGTGAGTCTTCGAGCTCAGAATCATCTTCAGAGGACAATAAATCAGATATCAAATTAACTCAGCAGATAAAACGTACGATTAAGAGCATAAGGAAAAATGCAACGACGAATAAACCGGAGTCGAGAAGAGTGACGCGGTCGTGTACTGAAGTGACATCACCTGCGGCTCCAGTTACTCAGTTGTCGTCGCAAAGGCCTTCTAGAAAAACTAAAGAAGCTGCTGCTGTTTATATGGAAATATTGAGTAGAAAATTAGTTAGTCCAGATTtagataatgatgataatttgtCTGTTGATAGTTATCCAGAGTTACCCAACACTAGGCGTCTTGTTGAGACGGAAGCTAAAGTTAAAGTTAAGAAACTGATTAAAGAAAAGAATAAAGACaaagataaagataaaaaagaaGTACTGAGTGGTAAATCAAACGTGGCTGGGGAGAAAGGTAAAGAGAAGGCTGCTGCAGTagtgaagaataaaaaaattgctaaGGCTCAAGAATCTTCGGAGAGCGAAGAAGAGTCTGTGAGTTCGGAAGAAAGTACGCGAGCCAGACGTATGACCAGACGTAGCAGCATTCCTTCAGCTAAACCAGTAGTTGCTCGCAGTCTCAGATCGTCATCACGTAATTCACCtcagaaaattgtaaattcgCCGCCTGCCGTTGTCGGTAAAGTCAAAAGCAAGACGTGGATTAGACGCAAACGAGAGACGGCTACTTCTCCGGTTGAAAAAGTCAAAGAGAAGGAAAAGGAAAAGgaaaaagagaaagaaaagGAAAAGGAAAAGGAGAAGGAAAAAGAGAAGGAAAAGGAAAAGAAAGTTAATGACAAGAAGAACAAAGAGGATAAACTACCGGAGGAAGAATTTAGTGGCGTAAGTAAAGTCAAGAAGAAAAAAGatgacgaaaaagttgaaaagttAGAAAAAGAAGTAAAGAAAGATATTGAGAAGGAAAAGGTTGAGAAAGACATCAAAGTATCTGATGATGAAGAATCTTTTCGTGGATTCATCACGAAGCCACTTACTAAGGTAGTTAATTCTTGCAATAATCAAGTGAGTGTTAATTTGACCCCTTCTGAAgaggttaataaaaaattgaatgctTTGAAAACTACTCCCAGTACTTTGGAGCTGAGGGATAAAGTTGGTAAAGTTGAAGTTCCTGCGTCGGTTAACGGCGGGGAGGTCAAGTCTGAGCAGAAAGAATCTTTGTCGAGTCATGTACCTGTTGTGGGATCGCTGTCATCTCAAGCCAGCATTTCGGagtctgataaaaaatttaatcgtgtAACAAATGTAAATACTCAAACTACCGCTGCTgctactgctgctgctgctatCATTGATATTCCGTTGACAACTTCTTCGTTGGGAAGAAAAGAACGTGTTAATATGTCGACAGAGCAAATTGAAAAGTGGTTGAATGAAAGTTCAATGGCCAAAGAAGAAAGTAAAGCTGAGATGGAGACTGTTACGAACTTTACATTTGAAGTTGCgggtaaaagtaaaaatgataTGAATCATTTGTCAATACCAACGCGTATCCAGCATCTTGTGAGACCGGTCAATGTTGCGATTGCTAAAATGGCTGAGAAGACGCTCACTAAAGAACGTTTGAGTAATGCGGTTAAGGCTGCGACTTTGGTCAACGCCGGAACTGTCGTAGGAGCTGCTGCAGCTATTGCGAAATTGTCGAGTTCAGCAAATCCGGTGCTCACGACgaacagaaataaaataaatgccgACATCAAGGAGATTATTAAGGGAAGAATCGCTAAGACTGGTGTCTGTACTCCGAGTAAAGAGACCGTTTGTGAAGACAGTGATGTAAGTTCACGAGCTGACGGTGCTAGTACTTCAGTCGAAGGATCTCCGGAGAAAAAATCACCCGATAAAAAACTTATTGTTCAGCGTAAAACATTTTTACCAAAAGTTAAAGAACGTAAGATTGCTATTCCTAGTATCAATGCCTTCTCTCCGGAAAATGAAAGCAGCGTTTATGCTTTTGAGAGCGATACTGAGGCTCCAGTTAATACGCCATTTCGGAGAAAACAACGTGACAGTAAATCTGGTGCTTCTGGTTCGTCGGACATGGATGTGTCGAGGACAGAGAGTGAGGATGGCAATACACGAACTCCTGGAAAGCTAACGGACAAGGATGATAAATGTATGAGTAAATCAAAAAGCGTTGGCACAAGTATTGAAGATGTTGGTACTGAAGTTAAGTCAATTACCAGCTCTGGTGACAAAACTAAACAGCCGAGTAGTTTTCAAATACCTGATACATTTCGTAACATGTCTAATGTGCAAGTTGTGCCTCTAGGAAAGATTCCTAGTGTGTGGAATAATGTAAACTGCAGTGCTTCAATAGCCGTGCAGGTAAACTTCGATGACCAGTCCCAGAATTTGCAGAATCAGGTGGCGGCTGAAGAGAGCCAGCAGCGTAGCACAGAAATATCAACACAGACGGAAAATACAAATGAGAATGAGGACGAGACTGATGCTCACGTATTTTACATTCCTTTGCAAACGGTATCTAGGAGCGGTCCTAATTTAGTACAGGGACAGCCGCTGATACAGGGAGTAGCTGTTAAATTAGGCACTGAGGGACCGACGGGCCCCAATCAGCGTGTGCTTTTACGAGCACAATTGGTAACAAAACCACCCATGGCTGTTGCAAGATGTCCTCCTGTTGGCACTGTGCAACCTACTACTCGGACACCTCCAACTGGTACCAGTGATACGGTACCGTCTACTTCTACATCGTCTACATCCACATCTACATCTAATTTAGGTCCAGTAAAACCTAGGATTCCGGGGTCGCAAGCAGAAAGTATTGCGAAGCAGACTGGCGTCGCTGAAAAAATTACCAAGTCTCCAAAGGTATCTCGCGAGCGTAAAAGCTCAGCGGATGCTCCTAAAGTTGGTAGAAAACTTTCAGCTAAGGCGAAAAAAAATGCTgagatgattaaaaatattgagaacGCGTTTCCTAGTATGGAAGTTAAAGGTGAAGCGCGCTTGGTTGATGCGCCGACGTTCTATCCTTCAGAGAAAGATTTTCAAGATCCGCTTGAGTACATCGACAAAATAAGACCTATCGCTGAAAAATATGGAATCTGTCGGGTGGTACCGCCTTCTAACTTCAAGCCCGAGTGTAAAGTATCAGACGACATGAGATTTACTGCTTACAATCAGTACATCCACCGCATGCTCCATCGATGGGGCCCAAATGTAAAGGAAATGATGgcgattaaaaagtatttagcAACTCAGAGTATTACTTTGAATCAGCCGCCGTGGATTGGTGGTATGGAAGTCGATTTGCCTCATCTGTATCAAACAGTACAGAGTCTAGGTGGCCTGAAAGAAgttatagagaaaaaaaagtggCAGAAGGTTGCCGATGGCATGAAGATTCCTAAATCTGCGCAAGATCGAGTTACCAAGCTAGATGATAtctattgtaaatatttattgccgTACGACACGTTGTCGACAGACGAAcgggaaaaattatttgatgaaGTAGAAGCTGAGTGGAGAAAACACGAGAGCAAAGCACTCCAGAGACTCAACAGCACGCTGTCAAGTGACAATGACGATGATGAAGACGATGACAGTTCCGATGAAATCGAGGAGTGCATTGTCAAGGGTAGAAATATGCCACTGAATGCTTTCTACAGGATAGCACGCAACACCCAGCGCATGTGGTTCTCTGACAACCAGAGCACGACTAATGAAGCCGAAGGTGCTTCGGCAAGTGAAGTTGAAAGCGCGTTTTGGAAGCATGTTTCTGAACGCAAACGTCATGTCTGTGTTCACGCTGCCAGCATCGATTCAAGTGGCCGCGGTTTCGGGTTCTCCGTTGCTAAAAACAGTCCATTCGCACGTCATCCGTGGAATCTTAAAGTCTTGACGAATAATAATGGCTCTGTTCTAAGAGCTCTGGGGCCACTGATGGGCGTCACTGTGCCCACACTCCACGTCGGGATGCTTTTCAGTGCCTGCTGCTGGTACCGTGACCCTCACGGATTACCGTGGATTGAATATCTGCACACTGGtgctaaaaaaatatggtACGGTATTCCAGATGAGCACAGTGATAATTTTCGAGAAGCTTTGTCTAAAATGGTACCGaggttttgtaaaaataaaacaatttggCTGCCTTCTGACACCGCCATGGTACCGCCTGAAATGCTTGTCAGTAATGGTGTTCCTTTATGTCAAACTGTTCAAGAACCTGGACAATTTATTATCGTTTTTCCCAAAGCATTTACTTCGAGTATTTGTACGGGATATGTTGTTTCGGAGAGTGTTTATTTTGCACAAACTACGTGGCTCGAACATGCTGAGCAAATATTcaagGATCTTCAGGATAGCTGTGAACCATCAATGTTTTCATTTGAAAGATTACtttttagtattattaatgatactaGATCTCATGTAGATGTTTTAAAACAgatTTTACCAGTTGTTACAAAAATACGAGAGAGAGAATTAAATTATCGTCAGCAATTAGAGTATTACGgactaattaataaagaaaaattaccatTACCCGGTAGCGGTAAACGTAAAAAAGggcaaaaattttcagaagaCGAAGACGAGTATGAGTGTGAAAATTGTCGtgctaatttatttgtttcattAGTTAACAATTCACAAGACGACAGTGCTTATTGCCTTCCTCATGGACTACAATTGATTGGACGTAAAAAACAAGTACTTAAAAGTTGTACACTCAAATATACGTATAGTGAGgATGAATTAGATGAATTGATTCACAAACTGGAGGATAGAATCGAAGCCAAATCTAAAAGAACTAATCAAACAAGACAAGCTAgactgtaa
Protein Sequence
MVLGRNDKRKRKVGDLVDLMDPLSESPKRAKVHAQRKFAQGSATVFTSPQTLVKEKEKPKPAKVTELITHKRPNTEDFLTFLCFRGTSILPPSLDFFNVGLKKDKAESKTTSKKLNSTSNSSTFTPTPSTSGVGSKAVTNQTTTTKGAAGKVGDPVRKKVTTEIQKPVNKFKSATSTIQALKKKYQEQRLAKQRIENKLKKNCVIRTRSTVGRPLLKTVHKLAPRKFLPRVEPKRHCLRSNTTLEKPFKAFGKSKIISASKGTAKKRAVLKEQSSESSSSESSSEDNKSDIKLTQQIKRTIKSIRKNATTNKPESRRVTRSCTEVTSPAAPVTQLSSQRPSRKTKEAAAVYMEILSRKLVSPDLDNDDNLSVDSYPELPNTRRLVETEAKVKVKKLIKEKNKDKDKDKKEVLSGKSNVAGEKGKEKAAAVVKNKKIAKAQESSESEEESVSSEESTRARRMTRRSSIPSAKPVVARSLRSSSRNSPQKIVNSPPAVVGKVKSKTWIRRKRETATSPVEKVKEKEKEKEKEKEKEKEKEKEKEKEKEKKVNDKKNKEDKLPEEEFSGVSKVKKKKDDEKVEKLEKEVKKDIEKEKVEKDIKVSDDEESFRGFITKPLTKVVNSCNNQVSVNLTPSEEVNKKLNALKTTPSTLELRDKVGKVEVPASVNGGEVKSEQKESLSSHVPVVGSLSSQASISESDKKFNRVTNVNTQTTAAATAAAAIIDIPLTTSSLGRKERVNMSTEQIEKWLNESSMAKEESKAEMETVTNFTFEVAGKSKNDMNHLSIPTRIQHLVRPVNVAIAKMAEKTLTKERLSNAVKAATLVNAGTVVGAAAAIAKLSSSANPVLTTNRNKINADIKEIIKGRIAKTGVCTPSKETVCEDSDVSSRADGASTSVEGSPEKKSPDKKLIVQRKTFLPKVKERKIAIPSINAFSPENESSVYAFESDTEAPVNTPFRRKQRDSKSGASGSSDMDVSRTESEDGNTRTPGKLTDKDDKCMSKSKSVGTSIEDVGTEVKSITSSGDKTKQPSSFQIPDTFRNMSNVQVVPLGKIPSVWNNVNCSASIAVQVNFDDQSQNLQNQVAAEESQQRSTEISTQTENTNENEDETDAHVFYIPLQTVSRSGPNLVQGQPLIQGVAVKLGTEGPTGPNQRVLLRAQLVTKPPMAVARCPPVGTVQPTTRTPPTGTSDTVPSTSTSSTSTSTSNLGPVKPRIPGSQAESIAKQTGVAEKITKSPKVSRERKSSADAPKVGRKLSAKAKKNAEMIKNIENAFPSMEVKGEARLVDAPTFYPSEKDFQDPLEYIDKIRPIAEKYGICRVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSITLNQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTDEREKLFDEVEAEWRKHESKALQRLNSTLSSDNDDDEDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSDNQSTTNEAEGASASEVESAFWKHVSERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNNGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSDNFREALSKMVPRFCKNKTIWLPSDTAMVPPEMLVSNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQTTWLEHAEQIFKDLQDSCEPSMFSFERLLFSIINDTRSHVDVLKQILPVVTKIRERELNYRQQLEYYGLINKEKLPLPGSGKRKKGQKFSEDEDEYECENCRANLFVSLVNNSQDDSAYCLPHGLQLIGRKKQVLKSCTLKYTYSEDELDELIHKLEDRIEAKSKRTNQTRQARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00380088;
90% Identity
iTF_01004009;
80% Identity
-