Mdem002232.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- -
- Assembly
- GCA_000572035.2
- Location
- NW:655113-656920[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.013 75 2.9 0.1 17 48 219 250 209 253 0.81 2 4 2.3e-08 0.00013 21.4 0.1 8 43 258 293 256 299 0.95 3 4 0.049 2.8e+02 1.1 0.0 22 43 315 336 305 343 0.81 4 4 0.0015 8.2 6.0 0.2 13 51 349 387 346 388 0.87
Sequence Information
- Coding Sequence
- atgtgtgaCTCAAAAATGTCATACAATAATTCATTATCAAAAGTTTTACATTTTCTATCCATCGCAGTCAGAGATATTGAAATTCCTGAAAATAGTGTCATTACGTGTTCTGTTGCTGAAGGTTTATCAGGAAATCAACCGGAGATTACACAGTCTACggagaatATCTgtggaaatgaaaatttaaatttgaatgacGAAATGTCTTACAAAGTTGAAAGTGTAGAATACATTTGTCAGGATTGCGAGCAGTCGTTTAGTTCCGCCAaactTCATCAAAACCACGTGCaagattttcatgaaaataaagtagaaaatttagaaaaaatcatcaaaactCCCAATGACGAGCTTCTGCTGTTCCAACTGGAATTGAAAGGCACTGATACTATTGAAGTTCagcataaaaatgataaatgtgTTTTATCTTTACCCGGAATTAGTAAATTAGAGGATACTGATGCCAGCGAAAATTATTGCGAGGATAAAAGTCTTTGGAACCAGCCTGGAAATTATAAAGAACAAGGTGCTGAtaccattgaaaaaaaattatatgaatgcGATGACTGTAAGAATAAATACTCGAAGCGAAAATCTTTAGTGGATCATATGTACAGGATTCATAAATTCAGTGAACCGGAAAATAAATCCACGGGTTTTTCTTTTAGTGAAGGAAAATATGAGTGCGATATTTGTCACTTGAAATTTTCGAAGCGACATTCTTTGTTGAGACATATTCGCAATGAACATTCTCAAAGTTTACCGGAAATAAATCCACctggaaatattaaattagagAGTACGAGTATGACTGAAAAACCACATGAATGTGACATTTGTTTTTCTCGATTTAGTTCTTCAAGGAGTGTCAAAagacacaaatttaaaatacactcGATCATTCtggatgataataataaaacgaagCTTTGTACTACGAgcgggaaaaaattcaaatgtgaCATTTGTATTTCTCAATTTACTACTATCTGGAATCTTAATAGACACAAGTTGAAAGTACACCGGATCAGTtgggataaaaataataaaccaaaGTTTACTCCTATGAGCGGGAAACAATTTGAATGTAATGTATGTCAAGCTCAATATTCTCATCATAGGACTTTGGTGCATCACCTGAGAAAAAAACATTCGATCAAATCAATCTGA
- Protein Sequence
- MCDSKMSYNNSLSKVLHFLSIAVRDIEIPENSVITCSVAEGLSGNQPEITQSTENICGNENLNLNDEMSYKVESVEYICQDCEQSFSSAKLHQNHVQDFHENKVENLEKIIKTPNDELLLFQLELKGTDTIEVQHKNDKCVLSLPGISKLEDTDASENYCEDKSLWNQPGNYKEQGADTIEKKLYECDDCKNKYSKRKSLVDHMYRIHKFSEPENKSTGFSFSEGKYECDICHLKFSKRHSLLRHIRNEHSQSLPEINPPGNIKLESTSMTEKPHECDICFSRFSSSRSVKRHKFKIHSIILDDNNKTKLCTTSGKKFKCDICISQFTTIWNLNRHKLKVHRISWDKNNKPKFTPMSGKQFECNVCQAQYSHHRTLVHHLRKKHSIKSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01003842;
- 90% Identity
- iTF_01003842;
- 80% Identity
- iTF_01003842;