Mdem003861.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microplitis demolitor
Gene Symbol
ham
Assembly
GCA_000572035.2
Location
NW:1037718-1060801[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00044 0.031 14.1 0.0 2 23 264 286 263 286 0.95
2 9 0.99 70 3.5 0.1 1 23 293 316 293 316 0.91
3 9 1.7e-05 0.0012 18.5 0.7 1 23 322 350 322 350 0.95
4 9 3.3e-06 0.00024 20.8 2.6 1 23 356 378 356 378 0.95
5 9 2e-05 0.0014 18.3 5.0 1 23 384 406 384 406 0.99
6 9 0.0093 0.66 9.9 1.0 3 21 415 433 413 434 0.93
7 9 4.7e-09 3.4e-07 29.7 1.2 1 23 776 798 776 798 0.99
8 9 6.3e-07 4.5e-05 23.0 3.2 1 23 804 827 804 827 0.97
9 9 7e-06 0.0005 19.7 3.4 1 23 833 855 833 855 0.99

Sequence Information

Coding Sequence
atggATTTAACTAAATCgcatattaattacaaattaagtGGCAGTAGTGACGAAGGCGAGGCTGCCACTAGCGGAGTCGTCGAAAGCAGCACGGAAATGGAAGACAGAAATATTTACGATGGAAAAAGGCCTGATGTGATGCAAGAGTTCGCCTCCTCGACGCAGTTTAAGGACGAGTTTAAGGGAGTTAGTGACAGGAAAAGCAAGGAGAGAGATGATGATAAGGCGTGGGAGTTTTCTGATAGGCAGACTCGTGATTATCGGATTGATTaccaaacaataaaacaaGAACCAAAAGAATCAAAAGAGCAAACCCGTGACTGGTTGTCACCGGTACCAGAAGTAGAAGTCGGAAGTTCATCATCCGGTCCTCTAGTCCGTGCGAGAAGAGAAATATCCCGGGGAACAAGATTCGGGCCCTTTTTAGGCAAATGGGCCAGCGAGCCGCACAATCCTCGTTACGCCTGGGAGgTTCGCGTTCCCGGAAACGGGGTAAGAGGATGGCTGGATGCCTCACATGAGCCGAGCAATTGGCTTAAATATATTCGCAGCACCGCCAGTCCACATGCCGTCAATATGCGTCATGTTCTCGTTGCCGGACAgATGGTCTACGAAACATTGAGAGATATATCAATAGGAGAAGAATTACTGATGGGTCTGCGAGAGCCGCTTCAGTTGCAGGACATGCTGGGCGAGAACACGACTGAAGACAGGACAGACCGCGAGACCGCATCGCAGCACAGTGGAACTGTTGATGAGGATCGTGAGGACGAGGAGGATTGTGAAATACGGTGTCCAGTTTGTGATAAACCATTTCAAGATCTTGAATTattaGATAACCATTTAGTAACAGGACATCGTTACCCATCGGACCAACACATCTGCGACAGCTGCCCGCGTGCATACGCCTGGCGCCCACTACTTGTACGTCATCGGGCAATAATACACGGCGACCTACGGAAATATCCTTGCGAGAATTGTCCAAAGTCAAACACGTCTCAGGTCTTCACAGATCCATCGAATCTCCAGCGACACATCCGGACGAACCACGTGGGAGCTCGCAGCCACGCGTGTACTGAGTGCGGCAAGACTTTTGCTACAAGCTCAGGATTAAAGCAGCATACTCATATTCACAGCAGCGTCAAGCCATTCCAGTGTGAAGTCTGCTTCAAGGCGTACACCCAGTTTTCAAACTTGTGCAGACACAAGCGCATGCACTCGACCTGCCGCATGCAGCAGAACTGTCTTCGTTGTGGCCAGTCATTTAGCACCGGAACTTCTCTGTCTAAGCACAAACGCTTCTGCGACTCGACTTCAGCGCCAGGTACACCAGCAGGACCAAGACCTGGTGCGATGCCCCAACTACCAACGGCGACGTCTTCAAATCCTTTCCTAGTTTATCAACGTCAACAACTGGGACCTGGATTGCCATTTTATCCTCATAATCTGATGCCTCCTTATCCGGGACTCTTTCCTAATGCCCCGAGCTTTCTTAATACTCCTTTACTATTCCCTCCTAAACTCCAGCAACAGTCTCAGCAAATGCCACAGCAATCGCAACCCCAGCAGTCGCCTCGGCACCAAGAAGAAATCAAACGCTGTGAAAGTCCTAAGAAAGAACGATTCACTCCACCACAGCTGCCACCCCAGTCTAGCAAAATATCTCCGTCAATGGCTGAAGAAGCTACGTCGACATTCAGACCTTCTCCAGCGAGGCCAACAGTCCAAGTGACGCCTACTCCAGACAGTGATGAAGACAAACGGATCCAAGAAACTAAAGTAGTTAAGCGAAAACTGGAAACCGATTCCAGCGAAGGGGAAGCTGAGCAACCACTTGATCTTCGAGTAATGAAACCTAAAATAGCTGCCCCAGAGACGCCGAGTCCACCACCAGAACCAGAACCAGTTAAACAAGAGAAAGAAGACGAGAAAATGGAGATCGAGGTTAAGGCTCCGAGTCCTAGAGTTTCTCATCACGAGAATCCGCCGACTCCGCCGATGGCCTATCCAAGACCAATTCATCCCATGTTTTTGGAAGCAATGTACCGACCGACCGGCACATTTCCGGGGTTTCCAGCGCCACCTCCACCACCGAATCACAACGAGTCACGCCTACTGCCACCTTTGCACCCATTCGGACCTCCAAGGATTCCTTTTTTAGGGAATCTCATGAACGGACTGAGCGGCGCTCGCGGTGAGTTCGATTTACTCTCCCGTACGCCTCTCGGTGCGTTTCCCGTCAAGCCCTTTCAGAACGTCATGTCCCAACACCATCCTCACCCGCACTCACACCACCACCACGTCTCCGGCAAAGTCAAAGACCGGTACTCGTGCAAATTCTGCGGTAAAGTATTTCCCCGAAGCGCCAATCTCACCAGGCACCTGCGGACACATACCGGGGAGCAACCCTACAAGTGCAAACACTGCGAAAGATCCTTCAGCATCTCCAGCAACCTCCAGCGGCACGTGAGAAATATCCACGACAAACAGCGACCCTTCAAGTGTCCCCTCTGCGAGAGATGCTTCGGCCAGCAGACTAACCTAGATCGGCACCTCAAGAAGCACGAGGCCGACGACGGTAGTGTTGTCGTCTCCGTCGCCGACTCCCCAAGCAGCAGCAATGACAACGAGCGTGAGGACACTTACTTCGACGAAATCAGATCCTTCATGGGAAAAGTCACCTACGGAACCGACAGCGGCTACGGATTAACTCATCCTGCCTACCTCCCACCCAGACTCGACGGCAAGGAGCCCGACTACGACGACGACGAGTACAGCGAAGAAGGCGTCTCCCCGTTGGATGAAACCGACGCGTTATCAGTCGAGGGTAAAGAGTCTCCAACTCAACAGTACGAACTTAAGTGCAGAAACAAACAGGAACTACTTAACAATAATACCGCTGAGCCTGTTATCGAAATCTCGACATAG
Protein Sequence
MDLTKSHINYKLSGSSDEGEAATSGVVESSTEMEDRNIYDGKRPDVMQEFASSTQFKDEFKGVSDRKSKERDDDKAWEFSDRQTRDYRIDYQTIKQEPKESKEQTRDWLSPVPEVEVGSSSSGPLVRARREISRGTRFGPFLGKWASEPHNPRYAWEVRVPGNGVRGWLDASHEPSNWLKYIRSTASPHAVNMRHVLVAGQMVYETLRDISIGEELLMGLREPLQLQDMLGENTTEDRTDRETASQHSGTVDEDREDEEDCEIRCPVCDKPFQDLELLDNHLVTGHRYPSDQHICDSCPRAYAWRPLLVRHRAIIHGDLRKYPCENCPKSNTSQVFTDPSNLQRHIRTNHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHSTCRMQQNCLRCGQSFSTGTSLSKHKRFCDSTSAPGTPAGPRPGAMPQLPTATSSNPFLVYQRQQLGPGLPFYPHNLMPPYPGLFPNAPSFLNTPLLFPPKLQQQSQQMPQQSQPQQSPRHQEEIKRCESPKKERFTPPQLPPQSSKISPSMAEEATSTFRPSPARPTVQVTPTPDSDEDKRIQETKVVKRKLETDSSEGEAEQPLDLRVMKPKIAAPETPSPPPEPEPVKQEKEDEKMEIEVKAPSPRVSHHENPPTPPMAYPRPIHPMFLEAMYRPTGTFPGFPAPPPPPNHNESRLLPPLHPFGPPRIPFLGNLMNGLSGARGEFDLLSRTPLGAFPVKPFQNVMSQHHPHPHSHHHHVSGKVKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKHCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSVVVSVADSPSSSNDNEREDTYFDEIRSFMGKVTYGTDSGYGLTHPAYLPPRLDGKEPDYDDDEYSEEGVSPLDETDALSVEGKESPTQQYELKCRNKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01006505;
90% Identity
iTF_01006505;
80% Identity
iTF_01005481; iTF_01004538;