Mdem001790.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- -
- Assembly
- GCA_000572035.2
- Location
- NW:1368195-1374958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.01 0.71 9.8 4.2 2 23 264 286 264 286 0.97 2 21 0.025 1.8 8.5 1.8 1 23 360 382 360 382 0.97 3 21 0.043 3 7.8 0.4 1 23 431 453 431 453 0.98 4 21 0.0011 0.08 12.8 0.4 1 20 524 543 524 545 0.95 5 21 0.12 8.4 6.5 2.9 1 23 557 580 557 580 0.96 6 21 0.15 11 6.1 1.9 2 23 586 607 585 607 0.95 7 21 0.0026 0.19 11.6 0.0 3 23 632 652 630 652 0.96 8 21 0.00036 0.026 14.4 0.4 1 23 658 681 658 681 0.95 9 21 1.2e-07 8.3e-06 25.4 0.2 2 23 719 741 718 741 0.96 10 21 0.00032 0.023 14.5 0.6 1 23 747 770 747 770 0.94 11 21 0.00023 0.017 15.0 3.1 2 23 777 799 777 799 0.96 12 21 0.00052 0.037 13.8 0.4 3 23 808 828 806 828 0.92 13 21 0.02 1.4 8.9 0.7 2 20 887 905 886 905 0.95 14 21 0.091 6.5 6.8 0.1 2 23 926 947 925 947 0.96 15 21 0.00015 0.011 15.6 0.6 2 23 964 985 963 985 0.96 16 21 0.00057 0.04 13.7 0.1 1 23 1005 1028 1005 1028 0.91 17 21 0.34 24 5.0 0.3 2 23 1094 1116 1093 1116 0.94 18 21 2.2e-05 0.0016 18.2 0.4 2 23 1151 1173 1150 1173 0.95 19 21 1.9 1.4e+02 2.6 0.2 1 23 1179 1203 1179 1203 0.95 20 21 2.1 1.5e+02 2.5 0.8 1 23 1208 1231 1208 1231 0.83 21 21 0.035 2.5 8.1 0.0 2 23 1261 1283 1261 1283 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGATGTGGTGGAGCTGAATAACATTGAAAATCTCTGTAGACTTTGTCTATCAACAGAGGATCCAAAGTCTCCAATATTCGGGCTCCAGGAGTCTCCAGTTTCGCtggttgaaaaaattcaggcttGCCTATCAATcgagATATTGTTGACagataaattatcaaagttaatatgtataaattgCCTGAAAAGTGTTAATCAGTGGCATAATTACAAGGAATCATGTCTCAAGTCACAGGAAAAACTCCAGCGATGGCTTGTCAAGCAAATTAATTCTTCTGTTGCTGTTGTCGCAACAATAAAGCCCGAGCCTCTGGACATAGAAGTGTACGAAGACAATATCGAGATCGTTGAAATGTCCGAAGATGAATTGCAAAACGAGTTATCAAACCGTAGTACAGAATCACCAAACGATAACGCTCTTCCAGAATTAGCAATACGTGGAAGCCGTCGTAGATTAGACATAAATTTACACAACAACACAGGTAaagataacaataaatatataaaatcatataaccAACGTATAGTATcagataataatgatgaaataaaattagaaccAACTGACGACGACGAGGACGATATCGATTGTAATGTTGATGTTGAGTCAATAAACGAAAATGACAATGAAGGTGAACTATTACTAAATCCAATGGCACTCGGTGCCAGCAAAAACATGGAACCAGACTCTACCCAAAAATTTAACGTACgtgcggtaaaaaaaaaagtccgcCGTGGGCCGCACACTCATTTCCGAGGCCCAAAAGTATTCAAACGTCGGTGTCCTCATTGCCAGCTGACATTGCACTCAAAATCCTCATACGCACGTCACATAAATCGTTATCATAACGACGCCCAACTTCCGTCAGCAGTGACGGCCGTCAATAATTCCATTGGAGGAAATTCTCAACAGCACCAGGTACCACACAACGGACTTCCCTATTCAAAAGACGACGACAATTCAGCAGCCGAAGAAATAGAAGACGTCGAAGACGAGCTGGTGAGTCTGGAAAAAGACGCGCCGTTGACTCAAGTCCAAGAGTCAATTATCAGTCAACTGAAAACCTTTTCTTGCTACGCCTGCCAGCAATCATTCAATGACAGGCGCAGTACATTAAATCACATACGTCAGCACATGCCCGACTTGAGACCCTACACATGCATCGCATGTCTCACTGAGTTTCCCGATCGTTCGATTTACAAACTACACTGCGGCGCTTCATTTGAATGCGCGATGAAAATAGCACTCGTGGTACCCAAACACGgtacagaaaaatatttcacatgTAACATGTGTTTGAGACCGATGCCGAACCGCAAAGAACTGATAAGTCATCTGTCAAAACACTCAGATCGTCAGTACGAGCAATTGACAGCACCGCCAGGCACCACCGGTTCAAAAAAACCGCCAAAATTAAAACCCATTGGTTCTAATTCTGGATCCGCGAATGCTTCaacttcaaattcaaatttaaattcaaattctgcaGTCGCTAAATCAACAGCTGCCGTTTCGACTACAATCGGACCCTACAGAAATGGAGACCCAGCTCACAACCACACCTGCGATTACTGCGGTATGATCTATCGATACAAACCCAATATGATAAAACACCAAGACTTGTGCAAACGTTTGCCTCCAGAGGAACGAACTTCTTATCGCTGCGTCCACTGCGGAATGACATTTTTGGTGTTCAAAAAATTCCAGTCCCACATTACCACTGAACACAACAAGaaagaattaatttgttttgtaTGTAATGGCAAATTCCGGTACTCGAATGAATATTTGATCCACCACCAGAAGCATCGGATGATAAACAAAGCCGCAGAAACTCACGCGTTGAATCACTGGAACAAAACGGTGACGATGAAATATGGCTGCGCTGTTTGTCCAGAGCAATTTGACACCAAGGCAGAGCTGAATGACCACCGGTCAGTTCATCTgaagctaaaaatattttcctgcAGCATTTGCCGGCGTATGTTCGGAAATTCTCAGTCGCTGCAGGAACACGTCAATGAAGACCACGCACTTGAAGTAGACCCAAATATATCAGCAATTGATTTTCTTGACCAAAGCACTGAGTTGCCAAACACCAGTGGCTGGTCCGTGAACACTGACCCGGGGGTGCGCAGTACCGAGTGCACGATTTGCGGGAAAGTATTTGCGAATTATCCGAACTTACGTCGGCACATTCGTTCGGTTCATGCTGCCGATGAACGTTTCAATTGCAACAAGTGTTCCAAGACATTTAGTAACGACGCTGAGTTGAGTGAACACACTGACAGCGCACATGCTGAGCAGGTCACCAACCGCTGCAACTACTGCAAGAAAAAGTTTGACAGCAAGCATGGGCTCGACGTCCATCAGCGCAACGCTCACGGAATAACTGACAGCAAATTGGCCTGCGATATCTGCGGCAAAGAATTCGGGAACGAGACGTCTCTGAAAATCCATCGCGGCCATCACTTCCGGCGCGACTCGCGACTCAGTATCCGGAACATGCCCCACCCGATGGACCAGGTCCAGGTTGAAATAAACGAAGCAGAACCGGAAGTTGACATCAGTACCCGACCCGGACGGGCTAGAAAATCTCTGTCGAATACGTCGTTGTCTTCATCGCCGAAAAGTTCATCGGAATTAAAGTGTCAAGTTTGCGATGACAAATTCACTGACGTCCACGATCTGCGTAAGCATCTTTGGGATGTCCATTGCGCTAAAAATAAACCCGAGAAATCTTTTACTGATGACAACAATTTGCAATGCGAATTGTGTACGAATGTCCTGCCGGATGACAAGAGTCTTGAAGAACACATGAAGTGGCATAAAGACAATCCCATTTTGTCTGACGGGTTGCAGCGGCCTGTTGACATTTCCTGTGACGTCTGCGGTAAATTTTACAGCTCGACGAAAGCTCTTTGGAAGCACAAAAAATTGCACAGTAAAACCGGAgtgacaattaaatttcaatcggTTAAAAAATCACAGCCTGCGCAGTACCCGTGTCCGGTTTGCCGCAAAGTATTTGGAAATGAAACTTCAATGAAAAAACACAAAGCCGCAGCTCATTATGCGCGTCGCAGTATCTCCGTTGTGACAACGACGACTCCCAAAGTGACGTCACGCAAATCGTCGCATGACGATGAAGTTAAACCCAAAAGACCTAAACTAGATTTTGATATCATCAGAAAAGCTTACAATCTTGAgccaaataattataatgctgAGGTCAGTGGAGGTCCCAGTAACAGTAAAAAACCCGTGTCTTGtggaatttgtaaaaaattactgcCCAGTATGAATTCGCTGTACAAACATCGGCAGAAtgtccataaaaattttagcaagTCACTGGATAATAATGACGACAACAGCGCACGTGCTCACAACGACCATGATAATGATGACGAGGCTATTGTTGATAAGTCCCGGGTGCCTTGCACTGAGtgcgataaaatattttctaatatgTCGAATATGAAGCAGCATTTGACGAAAGTACACGGGAATGGGAACAAATATTACTGCAGCGCTGACGGTtgcaatcaattatttaactcaCCTTTGGCTAAACAGTTACATGAAAAATCACACATGAATGTGTTGTACAGATGCACTATATGTTCGCGGCACATGTTTTTACGCAGTGCGATAATCCAGCATCTCGTTACGGAGCATAAAAATGACTACTCACCGGGTACTGAAAAAAGCCTATACAAAAAAACTGACCTCAGTAATTACCAAGTTCACGGAGCGGAAGGACGCGTATGTCCGATTTGTAATATTACTTATCCTAATATTAAAGccatgaaaattcattatgtTAAAATACATGAAAATAGTTAA
- Protein Sequence
- MDDDVVELNNIENLCRLCLSTEDPKSPIFGLQESPVSLVEKIQACLSIEILLTDKLSKLICINCLKSVNQWHNYKESCLKSQEKLQRWLVKQINSSVAVVATIKPEPLDIEVYEDNIEIVEMSEDELQNELSNRSTESPNDNALPELAIRGSRRRLDINLHNNTGKDNNKYIKSYNQRIVSDNNDEIKLEPTDDDEDDIDCNVDVESINENDNEGELLLNPMALGASKNMEPDSTQKFNVRAVKKKVRRGPHTHFRGPKVFKRRCPHCQLTLHSKSSYARHINRYHNDAQLPSAVTAVNNSIGGNSQQHQVPHNGLPYSKDDDNSAAEEIEDVEDELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTAPPGTTGSKKPPKLKPIGSNSGSANASTSNSNLNSNSAVAKSTAAVSTTIGPYRNGDPAHNHTCDYCGMIYRYKPNMIKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQSHITTEHNKKELICFVCNGKFRYSNEYLIHHQKHRMINKAAETHALNHWNKTVTMKYGCAVCPEQFDTKAELNDHRSVHLKLKIFSCSICRRMFGNSQSLQEHVNEDHALEVDPNISAIDFLDQSTELPNTSGWSVNTDPGVRSTECTICGKVFANYPNLRRHIRSVHAADERFNCNKCSKTFSNDAELSEHTDSAHAEQVTNRCNYCKKKFDSKHGLDVHQRNAHGITDSKLACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINEAEPEVDISTRPGRARKSLSNTSLSSSPKSSSELKCQVCDDKFTDVHDLRKHLWDVHCAKNKPEKSFTDDNNLQCELCTNVLPDDKSLEEHMKWHKDNPILSDGLQRPVDISCDVCGKFYSSTKALWKHKKLHSKTGVTIKFQSVKKSQPAQYPCPVCRKVFGNETSMKKHKAAAHYARRSISVVTTTTPKVTSRKSSHDDEVKPKRPKLDFDIIRKAYNLEPNNYNAEVSGGPSNSKKPVSCGICKKLLPSMNSLYKHRQNVHKNFSKSLDNNDDNSARAHNDHDNDDEAIVDKSRVPCTECDKIFSNMSNMKQHLTKVHGNGNKYYCSADGCNQLFNSPLAKQLHEKSHMNVLYRCTICSRHMFLRSAIIQHLVTEHKNDYSPGTEKSLYKKTDLSNYQVHGAEGRVCPICNITYPNIKAMKIHYVKIHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004526;
- 90% Identity
- iTF_01006490;
- 80% Identity
- -