Basic Information

Gene Symbol
jarid2b
Assembly
GCA_000572035.2
Location
NW:1255816-1263749[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.1 3.4e+03 -2.1 0.1 39 83 143 188 137 189 0.69
2 2 4.1e-23 6.6e-20 70.6 0.1 6 89 1361 1442 1357 1442 0.94

Sequence Information

Coding Sequence
ATGGTGTTGGGTAGAAATGATAAGAGAAAAAGGAAAGTCGGTGACCTGGTTGATCTTATGGATCCACTTTCGGAGTCTCCTAAaagAGCTAAAGTTCATGCTCAGAGAAAATTCGCTCAAGGATCAGCGACAGTGTTTACATCTCCTCAAACTTtagttaaagaaaaagaaaaacctAAACCTGCTAAGGTTACTGAGTTGATAACACATAAACGTCCTAATACTGAAGATTTTTTAACGTTTCTTTGTTTTAGAGGAACGTCGATATTACCACCgagtttagatttttttaatgttgggTTAAAGAAAGATAAAGCAGAATCAAAAACTACATCAAAAAAGTTAAGTAGTACAAGTAATTCATCAACATTTACTCCGACACCAAGTACATCTGGAGTAGGATCAAAAGCAGTAACAAATCAAACTACAGTAACTAAAGCAGGAGCAACAGGAAAAGTTGGTGATCCAGTGCGGAAAAAAGTTACAACAGAAATTCAAAAGcctgtaaataaattcaaatcagcAACGTCGACGATTCAAGCCCTGAAGAAAAAGTACCAAGAGCAACGTCTAGCCAAACAGAGGATTGAAAATAAGTTGAAAAAGACTTGTGTTATAAGCACACGGTTCTCTGCAGGCAGACCTATGTTAAAGACCGTTCACAAATTAGCACCACGTAAATTTTTGCCGAGAGTTGAACCTAAAAGACACTGCCTACGAAGTAACACGACGTTGGAAAAGCCGTTTAAAGCTTTTGGGAAagctaaaataatttcaccGTCAAAGGGAACGGCGAAGAAACGAGCGGTGTTGAAAGAACAGAGCAGCGAGTCTTCGAGCTCAGAATCTTCTTCAGAGGACAATAAAtcagatattaaattaactcaGCAGATAAAACGTACGATTAAGAGCATAAAGAAAAATGCAACAACGAATAAACCGGAGTCGAGAAGAGTCACTCGGTCGTGTACTGAAGTGACATCACCGGCGGCTCCAGTCACTCAGTTGTCGTCACAAAGGCCTTCTAGAAAAACTAAAGAAGCTGCTGCTGTTTATATGGAAATATTGAGTAGAAAATTAGTTAGTCCTGATTtagataatgatgataatttgtCTGTTGATAGTTATCCAGAGTTACCCAACACTAGGCGTCTTGTTGAAACGGAAGCTAAAGTTAAAGTTAAGAAACTGATTAAAGAAAAGAATAAAGacaaagacaaaaataaagataaaaaaaaagtactgagTAGAAAATCAAATGTTGCTGGAAATAAAGGTAAAGAGAAGGCTACTGCAGTAgtgaagaacaaaaaaattgctaaGGCTCAAGAGTCTTCGGAGAGCGAAGAAGAGTCTGTTAGCTCGGAAGAAAGTACGCGAGCCAGACGTATGACTAGACGTAGCAGCATTCCTTCAGCTAAGCCAGTAGTTGCTCGTAGTCTCAGATCGTCATCACGCAATTCACCTCAGAAGATTGTCAATTCACCGCCTGCCGTTGTCGGTAAAGTCAAAGCCAAGACTTGGATTAGACGCAAACGAGAGACGGTTACTTCTCCGGTTGAAAAAGTCAAAGAGAAGGaaaaggaaaaagaaaaagataaagataaagataaagaaaagGAGAAAGAGAAGGAGAAGGAGAAGGAAAAGAAAgttaatgaaaagaaaaacaaagagGATAAAGTACCGGACGAAGAATTTAGTGGCGTAAGTAAAGTCAAGAAGAAAAAAGATGATGAGAAGGTTGAAAAGTTAGAAAAAGAAGTAAAGAAAGATATTGAGAAGGAAAAGGTTGAGAAAGACATCAAAGGATCTGATGACGAAGAATCTTTTCGTGGATTTATCACGAAGCCAATAACTAAGGTAGCTAATCCTTGCAATAGTCAAGTGAGTGTTAATTTGACCCCTTCTGaagaagttaataaaaaattaaatgctttGAAAACTACTCCGAATACTTTGGAGTTGAGGGATAAAGTTGGCAAAGCTGAAGTTCCTGCGTCGGTTAACGGCGGGGAGGTGAAGTCTGAGCAAAAAGAATCTTTATCGAGTCATGTACCTGTTGTGGGATCGTTGTCATCTCAAGCCAGCATTTCAgagtctgataaaaaatttaatcgtgtAACAAATGTAAATACTCAAACTACTGCTACtactactgctgctgctgcggCTATTATTGATATTCCATTGACAACTTCTTCGTTGGGACGAAAAGAACGTGTTAATATGTCGACAGAGCAAATTGAAAAGTGGTTGAATGAAAGTTCAATGGCCAAAGAAGAAAGTAAAGCTGAGATGGAGACTGTTACGAACTTTACATTCGAAGTTGCgggtaaaagtaaaaatgatatGAATCATTTGTCAATACCAACGCGTATCCAGCATCTTGTGAGACCGGTTAATGTTGCGATTGCTAAAATGGCTGAGAAGACGCTTACTAAAGAACGTTTGAGTAATGCGGTTAAGGCTGCGACCTTGGTCAACGCCGGAACTGTCGTAGGAGCTGCTGCAGCCATTGCGAAATTGTCGAATTCAGCAAATCCGGTGCTCACGAcaaacagaaataaaataaacgctGATATCAAGGAGATTATTAAGGGAAGAATTGCTAAGACTGGTGTCTGTACTCCGAATAAAGAGACCGTTTGTGAAGACAGTGATGTAAGTTCCCGGGCTGACGGTGCTAGTACTTCAGTGGAAGGATCTCCGGAGAAAAAATCACCCGATAAAAAGCTTATTGTTCAACGTAAAACATTTTTACCAAAAGTTAAAGAACGTAAGATTGCTATTCCTAGTATCAATGCCTTCTCTCCGGAAAATGAAAGCAGCGTTTATGCTTTTGAGAGCGATACTGAAGCTCCAATTAATACGCCTTTCAGGAGAAAACAGCGTGACAGTAAATCTGGTGCTTCTGGTTCGTCGGACATGGATGTGTCGAGGACAGAGAGTGAGGATGGCAATACACGAACTCCTGGAAAGTTAACGGACAAGGATGATAAATGTATGAGTAAATCAAAAAGCGTTGGTACGAGTATTGAGGATGTTGGCACTGAAGTTAAGTCAATTACCAGCTCTGCTGATAAAACTAAACAGCCGAGTAGTTTTCAAATACCTGATACATTTCGTAACATGTCTAATGTGCAAGTTGTACCGCTTGGAAAGATTCCTAGTGTATGGAATAATGTAAATTGCAGTGCTTCAATAGCCGTGCAGGTAAACTTTGATGACCAGTCCCAGAATTTGCAGAATCAGGTGGCGACTGAAGAGAGCCAGCAGCGTAGCACGGAAATATCAACACAGACGGAAAATACAAACGAGAATGAGGACGAAACTGATGCTCACGTATTTTACATTCCTTTGCAAACGGTATCAAGGAGCGGTCCTAATTTAGTACAGGGACAGCCGCTGATACAGGGCGTAGCTGTTAAATTAGGCACTGAGGGACCGACGGGTCCTAATCAACGTGTGCTGTTACGAGCTCAATTGGTAACAAAACCACCGATGGCTGTTGCAAGATGTCCACCTGTTGGCACTGTGCAGCCTACTACTCGGACACCTCCAACTAGTACCAGTGATACGGTACCGTCTACTTCTACATcatctacatctacatctacatctaATTTAGGTCCAGTAAAACCTAGGATTCCGGGGTCGCAAACGGAAAGTGTTGCGAAGCAGACTGGTGTAGCTGAAAAAATTACCAAGTCTCCAAAGGTATCTCGCGAGCGCAAAAGCTCAGCAGATGCTCCTAAAGTTGCTAGAAAACTTTCGGCTAAGGCGAAAAAAAATGCTgagatgattaaaaatattgagaacGCGTTTCCTAGTATGGAAATTAAAGGTGAAGCGCGCTTGGTTGACGCGCCGACGTTCTATCCTTCAGAGAAAGATTTTCAAGATCCGCTTGAGTACATCGACAAAATAAGACCTATCGCTGAAAAATATGGAATCTGTCGGGTAGTACCGCCTTCTAACTTCAAGCCCGAGTGTAAAGTATCAGACGACATGAGATTCACTGCTTACAATCAGTACATTCACCGCATGCTCCATCGGTGGGGTCCAAATGTAAAGGAAATGATGgcgattaaaaagtatttagcTACTCAGAGTATTACTTTGAATCAGCCGCCGTGGATTGGTGGTATGGAAGTTGATTTGCCTCATCTGTATCAAACAGTACAGAGTCTAGGTGGCCTGAAAGaagtcatagaaaaaaaaaagtggcaGAAGGTTGCCGATGGCATGAAGATTCCTAAATCTGCGCAAGATCGGGTTACCAAGCTAGatgatatttattgtaaatatttattgccgTATGACACGTTATCTACAGACGAacgggaaaaattatttgatgaagTGGAAGCTGAGTGGAGAAAACACGAGAGCAAAGCACTTCAGAGACTCAACAGCACGCTGTCAAGTGACAATGACGATGATGAAGACGATGACAGTTCCGATGAAATCGAGGAGTGCATTGTCAAGGGTAGAAATATGCCACTGAATGCTTTCTACAGGATAGCACGCAACACCCAGCGCATGTGGTTCTCCGATAACCAGAGCACGACTAATGAAGCTGAAGGTGCTTCTGCAAGTGAAGTTGAAAGCGCGTTTTGGAAACATGTTTCTGAACGCAAACGTCATGTCTGTGTTCATGCTGCCAGCATCGATTCAAGTGGCCGCGGTTTCGGGTTTTCCGTTGCTAAAAACAGCCCATTCGCACGTCATCCATGGAATCTTAAAGTcttgacaaataataatggCTCTGTTCTAAGAGCTCTGGGCCCACTGATGGGCGTCACTGTGCCCACACTCCACGTCGGGATGCTTTTCAGTGCCTGCTGCTGGTACCGTGACCCTCACGGATTACCGTGGATTGAATATCTGCACACTGgtgctaaaaaaatatggtacGGTATTCCCGATGAGCACAGTGATAATTTCCGAGAAGCTTTGTCGAAAATGGTACCGaggttttgtaaaaataaaacaatttggCTGCCTTCTGACACTGCTATGGTACCGCCTGAAATGCTTGTCAACAATGGTGTTCCCTTATGTCAAACTGTCCAAGAACCTggacaatttattattgtttttcccAAAGCATTTACTTCGAGTATTTGTACAGGGTATGTTGTTTCGGAGAGTGTTTACTTTGCACAAACTACGTGGCTCGAACATGCTGAACAAATATTCaagGATCTTCAGGATAGCTGTGAACCATCAATGTTTTCATTTGAACGATTACTCTTtagtattattaatgatactaGATCTCATGTAGATGTTTTAAAgcagatATTACCGGTTGTTACAAAAATACGAGAgagagaattaaattatcgTCAGCAATTAGAGTATTACGGACTaatcaataaagaaaaattaccattacccGGTAGCGGTAAACGTAAAAAAGggcaaaaattttcagaagatGAAGACGAATATGAGTGTGAAAACTGTCGCGCTAATCTATTTGTTTcattagttaataattcacAAGACGACAGTACTTATTGCCTTCCTCATGGATTACAATTGATAGGACGTAAAAAACAAGTACTTAAAAGTTGTACACTTAAATATACGTATAGTGAggaTGAATTAGATGAATTGATTCACAAACTGGAGGATAGAATCGAAGCCAAATCTAAAAGAACTAATCAAACAAGACAAGCTagactataa
Protein Sequence
MVLGRNDKRKRKVGDLVDLMDPLSESPKRAKVHAQRKFAQGSATVFTSPQTLVKEKEKPKPAKVTELITHKRPNTEDFLTFLCFRGTSILPPSLDFFNVGLKKDKAESKTTSKKLSSTSNSSTFTPTPSTSGVGSKAVTNQTTVTKAGATGKVGDPVRKKVTTEIQKPVNKFKSATSTIQALKKKYQEQRLAKQRIENKLKKTCVISTRFSAGRPMLKTVHKLAPRKFLPRVEPKRHCLRSNTTLEKPFKAFGKAKIISPSKGTAKKRAVLKEQSSESSSSESSSEDNKSDIKLTQQIKRTIKSIKKNATTNKPESRRVTRSCTEVTSPAAPVTQLSSQRPSRKTKEAAAVYMEILSRKLVSPDLDNDDNLSVDSYPELPNTRRLVETEAKVKVKKLIKEKNKDKDKNKDKKKVLSRKSNVAGNKGKEKATAVVKNKKIAKAQESSESEEESVSSEESTRARRMTRRSSIPSAKPVVARSLRSSSRNSPQKIVNSPPAVVGKVKAKTWIRRKRETVTSPVEKVKEKEKEKEKDKDKDKEKEKEKEKEKEKKVNEKKNKEDKVPDEEFSGVSKVKKKKDDEKVEKLEKEVKKDIEKEKVEKDIKGSDDEESFRGFITKPITKVANPCNSQVSVNLTPSEEVNKKLNALKTTPNTLELRDKVGKAEVPASVNGGEVKSEQKESLSSHVPVVGSLSSQASISESDKKFNRVTNVNTQTTATTTAAAAAIIDIPLTTSSLGRKERVNMSTEQIEKWLNESSMAKEESKAEMETVTNFTFEVAGKSKNDMNHLSIPTRIQHLVRPVNVAIAKMAEKTLTKERLSNAVKAATLVNAGTVVGAAAAIAKLSNSANPVLTTNRNKINADIKEIIKGRIAKTGVCTPNKETVCEDSDVSSRADGASTSVEGSPEKKSPDKKLIVQRKTFLPKVKERKIAIPSINAFSPENESSVYAFESDTEAPINTPFRRKQRDSKSGASGSSDMDVSRTESEDGNTRTPGKLTDKDDKCMSKSKSVGTSIEDVGTEVKSITSSADKTKQPSSFQIPDTFRNMSNVQVVPLGKIPSVWNNVNCSASIAVQVNFDDQSQNLQNQVATEESQQRSTEISTQTENTNENEDETDAHVFYIPLQTVSRSGPNLVQGQPLIQGVAVKLGTEGPTGPNQRVLLRAQLVTKPPMAVARCPPVGTVQPTTRTPPTSTSDTVPSTSTSSTSTSTSNLGPVKPRIPGSQTESVAKQTGVAEKITKSPKVSRERKSSADAPKVARKLSAKAKKNAEMIKNIENAFPSMEIKGEARLVDAPTFYPSEKDFQDPLEYIDKIRPIAEKYGICRVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSITLNQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTDEREKLFDEVEAEWRKHESKALQRLNSTLSSDNDDDEDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSDNQSTTNEAEGASASEVESAFWKHVSERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNNGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSDNFREALSKMVPRFCKNKTIWLPSDTAMVPPEMLVNNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQTTWLEHAEQIFKDLQDSCEPSMFSFERLLFSIINDTRSHVDVLKQILPVVTKIRERELNYRQQLEYYGLINKEKLPLPGSGKRKKGQKFSEDEDEYECENCRANLFVSLVNNSQDDSTYCLPHGLQLIGRKKQVLKSCTLKYTYSEDELDELIHKLEDRIEAKSKRTNQTRQARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00380088;
90% Identity
iTF_01004009;
80% Identity
-