Basic Information

Insect: Microctonus hyperodae
Gene Symbol: PRDM10
Assembly: GCA_030347285.1
Location: JAQQBR010000004.1:7356220-7359954[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.056 4.1 7.8 3.2 3 23 495 515 493 515 0.98

2 14 1e-08 7.4e-07 29.0 1.7 1 23 568 590 568 590 0.99

3 14 0.012 0.88 9.8 2.2 1 23 598 621 598 621 0.97

4 14 0.0037 0.27 11.5 0.3 2 23 639 660 638 660 0.96

5 14 2.9e-05 0.0021 18.1 0.3 2 23 675 696 674 696 0.96

6 14 0.0015 0.11 12.7 3.9 1 23 714 736 714 736 0.97

7 14 0.0055 0.4 10.9 2.6 2 23 745 766 744 766 0.96

8 14 0.0036 0.26 11.5 0.3 1 23 773 795 773 795 0.98

9 14 0.00018 0.013 15.6 3.2 1 23 802 824 802 825 0.96

10 14 0.0035 0.25 11.6 3.0 1 23 830 852 830 852 0.98

11 14 9.8e-05 0.0071 16.4 4.7 1 23 858 881 858 881 0.96

12 14 0.0038 0.28 11.4 1.9 1 23 916 939 916 939 0.97

13 14 0.00048 0.035 14.3 2.2 1 23 961 984 961 984 0.97

14 14 0.0014 0.1 12.8 3.4 2 23 1021 1043 1020 1043 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.056	4.1	7.8	3.2	3	23	495	515	493	515	0.98
2	14	1e-08	7.4e-07	29.0	1.7	1	23	568	590	568	590	0.99
3	14	0.012	0.88	9.8	2.2	1	23	598	621	598	621	0.97
4	14	0.0037	0.27	11.5	0.3	2	23	639	660	638	660	0.96
5	14	2.9e-05	0.0021	18.1	0.3	2	23	675	696	674	696	0.96
6	14	0.0015	0.11	12.7	3.9	1	23	714	736	714	736	0.97
7	14	0.0055	0.4	10.9	2.6	2	23	745	766	744	766	0.96
8	14	0.0036	0.26	11.5	0.3	1	23	773	795	773	795	0.98
9	14	0.00018	0.013	15.6	3.2	1	23	802	824	802	825	0.96
10	14	0.0035	0.25	11.6	3.0	1	23	830	852	830	852	0.98
11	14	9.8e-05	0.0071	16.4	4.7	1	23	858	881	858	881	0.96
12	14	0.0038	0.28	11.4	1.9	1	23	916	939	916	939	0.97
13	14	0.00048	0.035	14.3	2.2	1	23	961	984	961	984	0.97
14	14	0.0014	0.1	12.8	3.4	2	23	1021	1043	1020	1043	0.96

Sequence Information

Coding Sequence: ATGGATTCAAGGGGCCCTCAAGAAGCAAGGGCTCCTGGTGACTCATTAGATTCCATTTTTATGGGCCACAATgctaatttatcatcaaaaaataacaatcgcctattttttttaacggTTGAATATGTTGAAGATCATCAATCTCGTGATTatacaaaaatgtttttaccCTATGAACAAGTATCCTTTTCTTCCAGAGCTACCTCACCTTTATCAGATTTTGAACATCGTGTGAGTCCACTTGATCCAAATATGAGCTCAACGGCACGATATTCACCAACACCAGTGCAATTACCATCGGTGCCCTTTCAAAATTCCGTTGTTGTTCTTCAGGGTCCACCATCACCATTAATTACACCATCAAATGATACAAATTCaagaacaaatattaatttcatttcggCTCAAAATAATAGTGTTCCAATAATTAGACAATCGGATGATGTCACggattttgttaataataccAATGAAGAAGGATTAGTAACAAGTGCTGgtggtgaattaattttaatgcaagGTGCAAATACTGAGTTGGTCGGATCGAATGCACCTTTAATGCTTACAAATATTCCTGGAACAGAATTTTCATTAACTAGAGATTTTTTGGTTATGAATGATGAACAATTGAGTATAATCGGATCATTAACAAATCAAAATTCAGAAATAATTGAGGAACAAGTGGGTGAAGCTGATATGAATAATCAAACATTAAAACAGtcagatgataaaaatgaagtaTTATTAGAGATTTGCCAAGAAACAACAACTGACGAAACGTttgttgaaaatgaaatattggagaatttcaataaatcaattgaaaatgatgatattgttgagtcattgataaatgaaaaatctaaTGTACGACGATctaaacgaaaaattaatgataaaactCTTGGATGTGAGGAATGTGACATAGTTTGTTCAAAAGTTAGTGAATGTATATGCCACAAGGTGTGCACAATAGCTGATCAACCTGTGCCATCTCGTGCTATTGCTACATTACCAGGATCATATCTtacgttaaataaattgacaattgCGAATGAAATTAGCGCTGGAAAAATAAGTTACGGCATTTATGCAAAACGTAATATACGACGATGTACACAATTTGGTCCTATCGAAGGAATACTATGTTCCTATAATGGCGAATCATTTGACAATGCTTTaccattaatttatgaaactaccgataaacaattattaaaagttgATGTATCAAATGAGAATACATCTAATTGGATGAGATTCGTTAGACCTGcaatgaattataatgaacaaaatttaataatttgtcaaCAGaatgatggaatattttttttaacaattcgTGATATTGTATCAAAAGAAGAACTAAAAGCGGGTCCAAGTTCAGAGTATGCAAAAAGTCGAAATTTAAAGATTTTACAACCTGTTCCTGATGCAAAAGACAAGAATACGACaatgaataatgatgaatgTACATGGCTATGTCATGAATGCGATCAACGTTTTCCAACGTgtcaaatatttgaaaaacatTTGAACATGCAtgataatcaaaatttatcgactggtaataacaataataataataacaacaacaacaacaataataataataataataataatacgagTAATAAACGACGAAAATTAACCGTGACAACTGACAAATTATTGAAAGTTGTTGGTGGTCAAACTTTACTATATACATGTCCACATTGTCCAAAAGTATTTCCACGAAGTTACAGTTTAAAACGTCATATGCTTATGCATTCAGGTACAAAAGCACCGCGATACGAGTGCACAAGATGCGGTGAAAACTTTTTACATCCTTATAATCGTAATCGGcacgtaaaaatatttcacagtgAAGAAATgcgtgaaaaagaaaatactctacaaaatattaatgaattgaaatgtCTAACGTGCAGTCTCACATTTGAAAAATCAagtcttttaaatattcatgcatTGGTACATAGTAAAGATATTAacgttattaataaacatgatGAATCATTAGAATGTCCACAATGTGGTATAGAATTTAAAAGacattatgatttaattaatcatgtgGCAAAACATGGAATAATGAAATTAccaaaaacaacaaaaatatctgCTGTTGTATCGTCACACAAATGTACAATGTGTTATAAACGTTTTGCAACAAAAATTCGTTTGCAACAACATTATTTAGTTCATGGCGCTGAAGATAAAAAACCACTACCATgcaatatttgtttcaaaagatttatgaataattcagCATTATCATGTCATTTGAAAACACATAGACaagacaaacaaatatttgaatgtCCGATGTGTCGGGagttatttaatcaaattctCACGTTGAAGAGTCATATTGAAACGCATAAAAATGCCGATGGGACCTTTACTTGTCCACATTGTCctagaatattttcaaaatactcTGTAATAAGAAAGCATATCAGAGCGCATCATTGTGAACGCAAACATAAATGTCAATTTTGCGTAAAGCGCTTTCCAACTATTGATAAATTACGTATGCATTTATTACGTCATTCTGATTATCGTGAATTTCATTGTGCTAATTGTGAAAAAAGATTTAAACGTAAAGATAAACTTAAAGAGCACATGACAAGAATGCACAATGCACAAAAAACTAAACGAGAACAAAAATCCAGAGAAAATCATAATCaggcaaaaaaatttattccaaaagTTAATCCAACAGATTATAATCGATTTGTCTACAAGTGTCATCGTTGTTTGGTTGGCTTCAAGAGACGTGGTATGTTGGTGAATCATTTAGCAAAACGGCATCCTGATGTTTCACCTGATTCTGTACCGGAATTAAATATGCCTATTTTACGACAAACTCGcgattattattgtcaatattGTGTTAAAGTTTATAAAAGTAGTAGTAAAAGAAAGGCacatattatgaaaaatcacCCGGGTGCAGCATTACCACCAAGCAATCGTCAAAAAGAAACTGATATACAGGGTTTACCGAATCCAACATTTAGTCAGACTGTTGGTAGTATAACTACACGTCCACAAAGTTGTCAGTGGTGCCACAAACAGTATGCGAGTAAggcTAAATTATTGCAACATCAACGTAAAAAACATCCTACATTAATGGAACCGGCAGATCAAATTCCACGACCGCGAAATCGTTTAACGCGAAATCAATCTTCACTATtgaatagcaataataatttcattttatctgaATATGTGACATATGATATTGATAGTAACgtaataaaaccaaaaattataaaaccatCAAACGATGTGGATTTGATAACGCACGGTCTCGAGATTGTTGGCCAACAATTCGTGCGAATTCGCGATATACGTTGA
Protein Sequence: MDSRGPQEARAPGDSLDSIFMGHNANLSSKNNNRLFFLTVEYVEDHQSRDYTKMFLPYEQVSFSSRATSPLSDFEHRVSPLDPNMSSTARYSPTPVQLPSVPFQNSVVVLQGPPSPLITPSNDTNSRTNINFISAQNNSVPIIRQSDDVTDFVNNTNEEGLVTSAGGELILMQGANTELVGSNAPLMLTNIPGTEFSLTRDFLVMNDEQLSIIGSLTNQNSEIIEEQVGEADMNNQTLKQSDDKNEVLLEICQETTTDETFVENEILENFNKSIENDDIVESLINEKSNVRRSKRKINDKTLGCEECDIVCSKVSECICHKVCTIADQPVPSRAIATLPGSYLTLNKLTIANEISAGKISYGIYAKRNIRRCTQFGPIEGILCSYNGESFDNALPLIYETTDKQLLKVDVSNENTSNWMRFVRPAMNYNEQNLIICQQNDGIFFLTIRDIVSKEELKAGPSSEYAKSRNLKILQPVPDAKDKNTTMNNDECTWLCHECDQRFPTCQIFEKHLNMHDNQNLSTGNNNNNNNNNNNNNNNNNNNTSNKRRKLTVTTDKLLKVVGGQTLLYTCPHCPKVFPRSYSLKRHMLMHSGTKAPRYECTRCGENFLHPYNRNRHVKIFHSEEMREKENTLQNINELKCLTCSLTFEKSSLLNIHALVHSKDINVINKHDESLECPQCGIEFKRHYDLINHVAKHGIMKLPKTTKISAVVSSHKCTMCYKRFATKIRLQQHYLVHGAEDKKPLPCNICFKRFMNNSALSCHLKTHRQDKQIFECPMCRELFNQILTLKSHIETHKNADGTFTCPHCPRIFSKYSVIRKHIRAHHCERKHKCQFCVKRFPTIDKLRMHLLRHSDYREFHCANCEKRFKRKDKLKEHMTRMHNAQKTKREQKSRENHNQAKKFIPKVNPTDYNRFVYKCHRCLVGFKRRGMLVNHLAKRHPDVSPDSVPELNMPILRQTRDYYCQYCVKVYKSSSKRKAHIMKNHPGAALPPSNRQKETDIQGLPNPTFSQTVGSITTRPQSCQWCHKQYASKAKLLQHQRKKHPTLMEPADQIPRPRNRLTRNQSSLLNSNNNFILSEYVTYDIDSNVIKPKIIKPSNDVDLITHGLEIVGQQFVRIRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01001628; iTF_01000800;
90% Identity: iTF_01000800; iTF_01001628;
80% Identity: -