Basic Information

Insect: Microctonus aethiopoides
Gene Symbol: prdm10
Assembly: GCA_030347275.1
Location: JAQQBS010000003.1:9036490-9040217[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.052 4.7 7.8 3.6 3 23 495 515 493 515 0.98

2 14 9.8e-09 8.8e-07 29.0 1.7 1 23 559 581 559 581 0.99

3 14 0.0018 0.16 12.4 2.0 1 23 589 612 589 612 0.97

4 14 0.0091 0.82 10.2 0.2 2 23 630 651 629 651 0.96

5 14 0.0034 0.3 11.6 0.6 2 23 666 686 665 686 0.93

6 14 0.00079 0.071 13.5 3.9 1 23 704 726 704 726 0.97

7 14 0.0094 0.84 10.2 2.5 2 23 735 756 734 756 0.96

8 14 0.0041 0.37 11.3 0.2 1 23 763 785 763 785 0.98

9 14 0.00015 0.013 15.8 1.6 1 23 792 815 792 815 0.96

10 14 0.0072 0.64 10.5 5.2 1 23 820 842 820 842 0.98

11 14 9.4e-05 0.0085 16.4 4.7 1 23 848 871 848 871 0.96

12 14 0.0036 0.33 11.5 1.9 1 23 906 929 906 929 0.97

13 14 0.00046 0.042 14.3 2.2 1 23 951 974 951 974 0.97

14 14 0.0014 0.12 12.8 3.4 2 23 1011 1033 1010 1033 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.052	4.7	7.8	3.6	3	23	495	515	493	515	0.98
2	14	9.8e-09	8.8e-07	29.0	1.7	1	23	559	581	559	581	0.99
3	14	0.0018	0.16	12.4	2.0	1	23	589	612	589	612	0.97
4	14	0.0091	0.82	10.2	0.2	2	23	630	651	629	651	0.96
5	14	0.0034	0.3	11.6	0.6	2	23	666	686	665	686	0.93
6	14	0.00079	0.071	13.5	3.9	1	23	704	726	704	726	0.97
7	14	0.0094	0.84	10.2	2.5	2	23	735	756	734	756	0.96
8	14	0.0041	0.37	11.3	0.2	1	23	763	785	763	785	0.98
9	14	0.00015	0.013	15.8	1.6	1	23	792	815	792	815	0.96
10	14	0.0072	0.64	10.5	5.2	1	23	820	842	820	842	0.98
11	14	9.4e-05	0.0085	16.4	4.7	1	23	848	871	848	871	0.96
12	14	0.0036	0.33	11.5	1.9	1	23	906	929	906	929	0.97
13	14	0.00046	0.042	14.3	2.2	1	23	951	974	951	974	0.97
14	14	0.0014	0.12	12.8	3.4	2	23	1011	1033	1010	1033	0.96

Sequence Information

Coding Sequence: atGGATTCAAGGGGCCCTCAAGAAGCAAGGGCTCCTGGTGACTCATTAGATTCCATTTTTATGGGTCACAATgctaatttatcatcaaaaaataacaatcgcctattttttttaacgGTTGAATACGTTGAAGATCATCAATCTCGTGattatacaaaaatgtttttgccCTATGAACAAGTGTCCTTTTCTTCCAGAGCTGCCTCACCTTTATCAGATTTTGAACATCGTGTGAGTCCACTTGATCCAAATATGAGTTCAACGGCACGATATTCACCAACACCAGTACAGTTACCATCGGTGCCCTTTCAAAATTCCGTTGTTGTTCTTCAGGGTCCACCATCACCATTAATAACACCATCAAATGATACAAATATaagaacaaatattaatttcatttcggCACCAAGTAATAGTGTTCCAATTACTAGACAAACGGATAATGTCACggattttgttaataataccAATGATGAAGGATTAGTAACAAGTGTTGgtggtgaattaattttaatgcaagGTACAAATACTGAGTTGGTTGGATCGAATGCACCTTTAATGCTTGCAAGTATTCCTGGAACAGAATTTTCATTAACAAGAGATTTTTTGGTTATGAATGATGAACAATTGAATATGATGGGATCATTAACAAATCAAAATTCAGAAATAATTGAGGAACAAGTGGATGAAGTTGATATGGATAATCAAACATTACGACAGTCAGATGATAAAGATGAAGTATTGGAAGAGATTTGCCAAGAAATAACAACTGACAAAACGTTTGTTGAAgatgaaatattgaagaatttcaataaatcaatcgaaaatgatgatatTGTTGAGTCTTTGATAAGTGAAAAATCTGATGTACGACGACCTaaacgaaaaattaatgataaaacttTTGGATGTGAGGAATGTGACATGGTTTGTTCAAAAGTTGGTGAATGTATGTGCCATAAGGTGTGCACAATAGCTGATCAGCCTGTGCCGTCTCGCGCTATTGCTACATTACCAGGATCATAtcttacattaaataaattgacaattgcGAATGAAATTACCGCTGGAAAAATGATTTACGGCATTTATGCAAAACGTAATATACGACGACGTACGCAATTTGGCCCTATCGAAGGAATACTCTGTTCCTACAATGGCGAATCATTTGACAATGCTTTaccattaatttatgaaactatcgataaacaattattaaaagttgATGTATCGAATGAGAATACATCTAATTGGATGCGATTTGTTAGACCTGCAACGAAttataatgaacaaaatttaataatttgtcaacaaaatgatggaatattttttttaacaattcgTGATATTGTACCAGAAGAAGAACTAAAAGCGGGTCCAAGTTCAGAGTATGCAAAGAgtcgaaatttaaaaattttacaagcTGATTCTGATgcaaaagacaaaaatacgacaataaataatgatgagtgTACATGGCTTTGTCATGAATGCGATCAACGTTTTCCAACgtgtcaaatatttaaaaaacatttgaatgttcatgataatcaaaatttatcagCTGGTAAtactaatacaaataataataataataataataataataaacgacGAAAATTAAGCGTGACAGCTGACAAATTAATGAAAGTTGTTGGTGGTCAAACATTACTATATACATGTCCACATTGTCCAAAAGTATTTCCACGAAGTTACAGTTTAAAACGTCATATGCTTATGCATTCAGGTACAAAAGCACCTCGATACGAGTGCACAACGTGCGGTGAAAACTTTTTACATCCTTATAATCGTAATCggcacataaaaatatttcacagtgAAGAAATgcgtgaaaaagaaaatactcTACACAATATTAACGAATGGAAATGTCTAACGTGTAGTCTCACATTTGAGAAATCAAGTCTTTTAAGTATTCATGCATTGGTGCACAGTAAAGATGTCAACGTTATCAATAAACACGATGAATCATTAGAATGTCCACAATGTGGTACGGAATTTAAAAGacatgatttaattaatcatgtgGCAAAGCACGGAATAATGAAATTAccaaaaacaacaaaaatatctgCTGTTGTATCATCACACAAATGTACTATGTGTTATAAACGTTTTGCAACAAAAGTTCGTTTGCAACAACATTATTTAGTTCATGGCGCTGAAGATAAAAAACCGCTGCCATGCAATGTTTGTTTCAAaagatttatgaataattcagCATTATCATGTCATTTGAAAACACATAGACAAGACAAACAGATATTTGAATGTCCGATGTGTCgggaattatttaatcaagttCTCATGCTAAAGAGTCATATTGAAACGCATAAAAATGCCGATGAGACATTTACCTGTCCACATTGTCCTagaatattttctaaatactCTGTAATAAGAAAGCATATCAGAGCATATCATTGTGAACGCAAACACAAATGTCAATTTTGCGTAAAGTGCTTTCCAACTATTGATAAATTACGTATGCATTTATTGCGTCATTCTGATTATCGAGAATTTCATTGCGCTAATTgtgaaaaaagatttaaacGTAAAGATAAACTTAAAGAGCACATGACAAGAATGCATAACGCACAAAAAGCTAAACGAGAACAAAAATccagagaaaataataatcaggcaaaaaaatttattccaaaagTTAATCCAACAGATTATAATCGATTTGTCTACAAGTGTCATCGATGTTTGGTTGGCTTCAAGAGACGTGGTATGTTGGTGAATCATTTGGCAAAACGGCATCCTGATGTTTCACCTGATTCTGTACCGGAATTAAATATGCCAATTTTACGACAAACTCGCGATTACTATTGTCAATATTGTGTTAAAGTTTATAAAAGTAGTAGTAAAAGGAAGGCAcatattatgaaaaatcatCCGGGTGCAGCATTACCACCAAGCAATCGTCAAAAAGAAACTGATGTACCGGGTTTACCGAATCCAACATTTAGTCAGACCGTTGGTAGTATAACTACACGCCCACAAAGTTGTCAGTGGTGCCACAAACAGTATGCGAGTAAGgCTAAATTATTGCAACATCAACGTAAAAAACATTCTACATTAATGGAACCAGCAGACCAAATTCCACGACCGCGAAATCGTTTAACGCAAAATCAATCTTCACCATtgaatagcaataataatttcattttatctgaATACATAACATATGATATTGATAGTAACGTAATGAaaccaaaaattataaaagcatCAAACGATGTGGATTTCATATCACACGGTCTCGAGATTGTTGGCCAACAATTCGTGCGAATTCGCGATATACGTTGA
Protein Sequence: MDSRGPQEARAPGDSLDSIFMGHNANLSSKNNNRLFFLTVEYVEDHQSRDYTKMFLPYEQVSFSSRAASPLSDFEHRVSPLDPNMSSTARYSPTPVQLPSVPFQNSVVVLQGPPSPLITPSNDTNIRTNINFISAPSNSVPITRQTDNVTDFVNNTNDEGLVTSVGGELILMQGTNTELVGSNAPLMLASIPGTEFSLTRDFLVMNDEQLNMMGSLTNQNSEIIEEQVDEVDMDNQTLRQSDDKDEVLEEICQEITTDKTFVEDEILKNFNKSIENDDIVESLISEKSDVRRPKRKINDKTFGCEECDMVCSKVGECMCHKVCTIADQPVPSRAIATLPGSYLTLNKLTIANEITAGKMIYGIYAKRNIRRRTQFGPIEGILCSYNGESFDNALPLIYETIDKQLLKVDVSNENTSNWMRFVRPATNYNEQNLIICQQNDGIFFLTIRDIVPEEELKAGPSSEYAKSRNLKILQADSDAKDKNTTINNDECTWLCHECDQRFPTCQIFKKHLNVHDNQNLSAGNTNTNNNNNNNNNKRRKLSVTADKLMKVVGGQTLLYTCPHCPKVFPRSYSLKRHMLMHSGTKAPRYECTTCGENFLHPYNRNRHIKIFHSEEMREKENTLHNINEWKCLTCSLTFEKSSLLSIHALVHSKDVNVINKHDESLECPQCGTEFKRHDLINHVAKHGIMKLPKTTKISAVVSSHKCTMCYKRFATKVRLQQHYLVHGAEDKKPLPCNVCFKRFMNNSALSCHLKTHRQDKQIFECPMCRELFNQVLMLKSHIETHKNADETFTCPHCPRIFSKYSVIRKHIRAYHCERKHKCQFCVKCFPTIDKLRMHLLRHSDYREFHCANCEKRFKRKDKLKEHMTRMHNAQKAKREQKSRENNNQAKKFIPKVNPTDYNRFVYKCHRCLVGFKRRGMLVNHLAKRHPDVSPDSVPELNMPILRQTRDYYCQYCVKVYKSSSKRKAHIMKNHPGAALPPSNRQKETDVPGLPNPTFSQTVGSITTRPQSCQWCHKQYASKAKLLQHQRKKHSTLMEPADQIPRPRNRLTQNQSSPLNSNNNFILSEYITYDIDSNVMKPKIIKASNDVDFISHGLEIVGQQFVRIRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01002293;
90% Identity: iTF_01002293;
80% Identity: -