Mhyp002990.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microctonus hyperodae
Gene Symbol
ham
Assembly
GCA_030347285.1
Location
JAQQBR010000003.1:1460278-1485667[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00068 0.049 13.8 0.1 2 23 177 199 176 199 0.95
2 9 1.1 83 3.6 0.1 1 23 206 229 206 229 0.91
3 9 6.9e-05 0.005 16.9 2.4 1 23 235 263 235 263 0.95
4 9 3.9e-06 0.00028 20.9 2.6 1 23 269 291 269 291 0.95
5 9 1.9e-05 0.0014 18.6 6.0 1 23 297 319 297 319 0.99
6 9 0.0028 0.2 11.8 0.8 3 21 328 346 326 347 0.94
7 9 5.5e-09 4e-07 29.8 1.2 1 23 721 743 721 743 0.99
8 9 7.4e-07 5.3e-05 23.1 3.2 1 23 749 772 749 772 0.97
9 9 8.2e-06 0.00059 19.8 3.4 1 23 778 800 778 800 0.99

Sequence Information

Coding Sequence
ATGGCACGGACTCCCGAGGGAGCGAAACTTGGGGACGATGacgAATATATGGAGACATTGAAGCAAGAAGATCCTGCAGTTGAGGTTGGAACATCAACAAGCGGAAGTCCCTTGATTCGTGCGAGAATAAACATTCCAAGGGGAACGAGATTTGGACCATTTCTTGGTAGATGGGTCGGAGAACCTCACAATCCTCGTTATGCGTGGGAGgTGAGAGTTGTACGAACTGGAGTACGTGGATGGCTGGACGGGTCACATGACGCTACAAATTGGCTTAAGTATATTCGCAGTACGTCAATTCCACATGAAGTCAATATGCGTCATGTTCTGGTGGGCGGTCAGGTTGTCTATGAGACAGTTAGATACATTGGAGAGGGTGAGGAATTATTGATGGGACCACGTGAACCACTTCAACTTCAGGATATGCTTGGGGAAAATACAACTGATGATCGAACTGATCGCGAGACTGcATCTCAACACAGTGAAACTGTTGATGAGGATCGAGAAGACGAGGAGGATTGCGAGATACGTTGTACTGTGTGCGATAAACCTTTTCAAGACCTCGATTTattggACAATCATTTAGTGACAGGTCATCGTTATCCTGCCGAACAGCATATTTGTGAAAGTTGTCCAAGAGCATACGCCTGGCGACCATTGCTCGTACGTCATCGTGCAATTGTTCACGGAGACTTAAGAAAATATCCGTGCGAAAATTGCCCAAAGAAAACAACACAACAGGTCTTTACAGATCCATCAAATCTTCAACGTCACATCAGGACAAATCACGTAGGTGCAAGGAGTCACGCATGTACTGAATGCGGTAAAACATTTGCCACCAGCTCCGGTTTAAAGCAACATACGCATATACATAGCAGCGTTAAACCATTTCAATGCGAAGTTTGTTTTAAATCTTACAcgcaattttcaaatttatgcCGTCATAAACGTATGCACTCTACGTGTCGTATGCAACAAAATTGCGCTAAATGCGGACAAACATTCAGCACTGGTACATCATTATCAAAACATAAACGCTTTTGTGATTCTACATCACCAAGTGGACCGTCAGCACGAGCACCTGGAACAATGCCACAAATGCCACCGTCAGCACCTAATCCTTACATGCTTTATCAACGACCGTCAGTGTCATTACCTGGTGTACCGTCATTTTATGCACCGAGTCTAATGGCACATTATCCAGGAATATTTCGTCATTCACCATTTTCCCTCAATACACCGCTTTTATTTCCACCAATCCAAATTaaagaagaaacaaaacaCAGTGTAAGTCCCAAGAAAGAACGATTTTCACCACCGCAATTTTTTCCACaatccaataaaatttctccATCAACTGCTGAAGAAGCCACATCAACATCACGACCATCGCCAGCTCGACCCAGTGTACAACCGACTTCAGAAAATGACGTAGACTTAATAAAACAAGAGAGAAAAccgatgaagataaaaattgaacCAATTGAATCATCTTCTTCAACTACCATGGCTTCCACAACAGCTAATACCACTACTACCACCACGACCACCACTACTACAACCACCACAATCACCGAGGAATCTGCTGATCAACCGCTAGACCTCACAATGTCAGCGAAAAAACGCCCGAATATACCACCATGCAAAGAAGAAGAATGTCCAAGTCCCGTGCCGGCCATGGTCTCATTGGAATTACCCAAAGATATTAAACAAGAGGAGGAAAAAATGGAGGTTGAggtaaaaacaatttcaagTCCTCAGCCGCGTGTTAGTTTACCACACGATCATCAACCGTCAAATACACCACCACATATGGCGTATCCACGTCCGATTCATCCAATGTTTCTCGAGGCTATGTATCGTACACCCAATGCATCATTTCCGGGTTTTCCTGGTGCACCACCACCCAATGCACCACCGGAATCACGACTACTGCCGCCACTTCATCCCTTCGGACCGCCACGACTTCCTTTTTTAGGAAGCCTTATGAACGGTCTCAGTGGCGCTAGACCAGGCGAAGGCTTTGATTTACTTGGACGATCGCCACTGAGTGCATTCCCCGGTGTAAAGCCTTTTCAAAATGCCGTAAtgtctcatcatcatcatccccatcatcatcatcaccatcatcatcatccgcCGGGCAAAATTAAAGATCGTTATTCGTGTAAATTTTGCGGCAAAGTTTTTCCACGATCCGCAAATTTAACTCGACATTTACGAACACACACTGGTGAACAACCGTATAAATGCAAACACTGCGAAAGATCATTCAGTATTTCGAGTAATTTACAACGTCATGTGAGAAATATTCACGATAAACAACGTCCATTTAAGTGTCCATTGTGTGAACGTTGCTTTGGTCAGCAGACAAATTTAGATCGACATTTGAAAAAACACGAAGCGGATGATGGTAGTGTTGTTGTCTCAGTTGCCGATTCACCTGGGAGTAGTAATGATAATGAACGTGAGGATTCGTGTTTTGAAATTAGATCGTTTATGGGTAAAGTAACGTACAGTGGCGATGGTGGTTATGGATCGCAGCATTATCCTGCGTATATGCCTGAAAGattacttgaaaataaaacagagcctgattatgatgatgatgaatacaGTGAAGAAGATGTTTCGCCTTTGGAAGAAACTGATGGTATGTCAATTGAAGGAAAAGAATCACCGACTCAGCAATACGAGCTCAAATGCAGAAATAAACAAgaacttttaaataataataccgcTGAACCGGTTATAGAGATTTCAACATAG
Protein Sequence
MARTPEGAKLGDDDEYMETLKQEDPAVEVGTSTSGSPLIRARINIPRGTRFGPFLGRWVGEPHNPRYAWEVRVVRTGVRGWLDGSHDATNWLKYIRSTSIPHEVNMRHVLVGGQVVYETVRYIGEGEELLMGPREPLQLQDMLGENTTDDRTDRETASQHSETVDEDREDEEDCEIRCTVCDKPFQDLDLLDNHLVTGHRYPAEQHICESCPRAYAWRPLLVRHRAIVHGDLRKYPCENCPKKTTQQVFTDPSNLQRHIRTNHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHSTCRMQQNCAKCGQTFSTGTSLSKHKRFCDSTSPSGPSARAPGTMPQMPPSAPNPYMLYQRPSVSLPGVPSFYAPSLMAHYPGIFRHSPFSLNTPLLFPPIQIKEETKHSVSPKKERFSPPQFFPQSNKISPSTAEEATSTSRPSPARPSVQPTSENDVDLIKQERKPMKIKIEPIESSSSTTMASTTANTTTTTTTTTTTTTTITEESADQPLDLTMSAKKRPNIPPCKEEECPSPVPAMVSLELPKDIKQEEEKMEVEVKTISSPQPRVSLPHDHQPSNTPPHMAYPRPIHPMFLEAMYRTPNASFPGFPGAPPPNAPPESRLLPPLHPFGPPRLPFLGSLMNGLSGARPGEGFDLLGRSPLSAFPGVKPFQNAVMSHHHHPHHHHHHHHHPPGKIKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKHCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSVVVSVADSPGSSNDNEREDSCFEIRSFMGKVTYSGDGGYGSQHYPAYMPERLLENKTEPDYDDDEYSEEDVSPLEETDGMSIEGKESPTQQYELKCRNKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01560641;
90% Identity
iTF_01000777; iTF_01001599;
80% Identity
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