Mbra011356.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microctonus brassicae
Gene Symbol
ham
Assembly
GCA_940306215.1
Location
OW675807.1:8332275-8359531[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00073 0.075 13.7 0.1 2 23 240 262 239 262 0.95
2 9 1.2 1.2e+02 3.5 0.1 1 23 269 292 269 292 0.91
3 9 7.4e-05 0.0076 16.8 2.4 1 23 298 326 298 326 0.95
4 9 4.1e-06 0.00042 20.7 2.6 1 23 332 354 332 354 0.95
5 9 2.1e-05 0.0021 18.5 6.0 1 23 360 382 360 382 0.99
6 9 0.003 0.31 11.7 0.8 3 21 391 409 389 410 0.94
7 9 5.9e-09 6e-07 29.7 1.2 1 23 787 809 787 809 0.99
8 9 7.9e-07 8.1e-05 23.0 3.2 1 23 815 838 815 838 0.97
9 9 8.7e-06 0.00089 19.7 3.4 1 23 844 866 844 866 0.99

Sequence Information

Coding Sequence
atggaTTTGTCAAAATCAATGACTGATTATAATCCAAGTAGTAGTGACGAAGGTGAAACGACACTTGGCAGTGGTGAAACTGGTGTAATCAATGAACGTTGTATTGAAATAGAAGAACAAGcaagtaatatttatcaagaacACAAAAGTATTGATGATATTCATCCGAAAAATCATAGTCCACAACCGAGTATTCAAGAAAAAGTAGCAGCTGCCCTTAGCAGTTATCacgAATATATGGAGACATTGAAGCAAGAAGATCCTGCAGTTGAGGTTGGAACATCAACAAGCGGAAGTCCCTTGATTCGTGCGAGAATAAACATTCCAAGGGGAACGAGATTTGGACCATTTCTTGGACGATGGGTCGGCGAACCTCACAATCCTCGTTATGCGTGGGAggtGAGAGTTGTACGAACTGGAGTACGTGGATGGTTGGACGGGTCACATGACGCTACAAATTGGCTCAAGTATATTCGCAGTACGTCAATTCCACATGAAGTCAATATGCGTCATGTTCTCGTGGGTGGCCAGGTTGTGTATGAGACAGTTAGATACATTGGAGAGGGTGAGGAATTATTGATGGGACCACGTGAACCACTTCAACTTCAGGATATGCTTGGAGAAAATACAACTGATGATCGAACTGATCGCGAGACTGcATCCCAGCACAGTGAAACTGTTGATGAGGATCGAGAAGACGAGGAGGATTGCGAGATACGTTGTACTGTGTGCGATAAACCTTTTCAAGACCTCGATTTatTGGACAATCATCTGGTGACAGGTCATCGTTACCCTGCCGAACAGCACATTTGTGAAAGTTGTCCAAGAGCATACGCCTGGCGACCATTGCTTGTACGTCATCGTGCAATTGTTCACGGAGATTTACGAAAATATCCGTGCGAAAATTGCCCAAAGAAAACAACACAACAGGTCTTTACAGATCCATCAAATCTTCAACGTCACATCAGGACAAATCACGTAGGTGCAAGGAGTCACGCATGTACTGAATGCGGTAAAACATTTGCCACCAGCTCCGGTTTAAAGCAACATACGCACATTCATAGTAGCGTAAAACCATTTCAGTGCGAAGTTTGTTTCAAATCTTACAcgcaattttcaaatttatgtcGACATAAACGTATGCACTCTACGTGTCGTATGCAACAAAATTGCGCTAAATGCGGACAAACATTCAGCACTGGTACATCATTGTCAAAACATAAACGCTTTTGTGATTCTACATCACCAAGTGGACCATCAGCACGAGCACCTGGAACAATGCCACAAATGCCACCGTCAGCACCTAATCCTTACATGCTTTATCAACGACCGTCAGTTTCATTACCTGGTGTACCGTCATTTTATGCACCCAGTCTAATGGCACATTATCCTGGAATATTTCGTCATTCACCATTTTCCCTGAATACACCACTTCTATTTCCACCAATCCAAattaaagaagaaacaaaacaCAGTGTAAGTCCCAAAAAAGAACGATTTTCACCACCGCAATTTTTTCCACAatccaataaaatttctcCATCAACTGCTGAAGAAGCGACATCAACATCAAGACCATCACCAGCCCGACCCAGTATGCAACAAACTCCAGAAAATGACGTAGACTTAATAAAACAAGAGAGAAAaccgatgaaaataaaaattgaaccaATTGAAACATCTTCAACTACCATGGCTTCCACAACAGCTAATaccactactactaccactaccaccaccaccaccactactactaccacAACAATCACTGAAGAATCTGCTGATCAACCGCTAGACCTCACAGTATCGGCGAAAAAACGTCCTACTACAACGCCATGCAAAGAGGAAGAATGTCCAAGTCCAAGTCCAATACCTACCATTGCCTCATTGGAATTACACAAAGATATTGAACAAGAGgatgaaaaaatggaagtTGAGGTAAAAACAATTTCAAGTCCTCAGCCGCGTGTCAGTTTACCGCACGATCATCAACCATCAAGTACACCACCACACATGGCGTATCCACGTCCAATTCATCCAATGTTCCTCGAAGCTATGTATCGTACACCAAATGCATCATTTCCGGGTTTTCCTGGTGCACCACCACCCAATGCACCACCGGAATCACGACTATTACCGCCACTTCATCCCTTCGGACCGCCGCGACTTCCTTTTTTAGGAAGCCTTATGAACGGACTCAGCGGCGCTAGACCAGGCGAAGGCTTTGATTTACTTGGACGATCACCACTGAGTGCATTTCCCGGTGTAAAGCCCTTTCAAAATGCCGTAATggctcatcatcatcatccccatcatcatcaccatcatcatcatccgcCGGGCAAAATTAAAGATCGttattcatgtaaattttGCGGTAAAGTTTTTCCACGATCGGCCAATTTAACACGACATTTAAGAACACACACTGGAGAACAACCGTATAAATGCAAGCACTGCGAAAGATCGTTCAGTATTTCAAGTAATTTACAACGTCATGTGagaaatattcatgataaacAACGTCCATTCAAGTGTCCATTGTGTGAACGTTGCTTTGGTCAGCAGACAAATTTAGATCGTCATTTGAAAAAACACGAAGCGGACGATGGTAGTGTTGTTGTCTCAGTTGCCGATTCACCTGGCAGCAGCAATGATAATGAACGTGAGGATACGTGTTTTGATGAAATTAGATCGTTTATGGGTAAAGTAACGTACAGTGGCGATGGTGGTTATGGTTTACAGCATTATCCTGCGTATATGCCTGAAAGattgcatgaaaataaaacagaggttgattatgatgatgatgaatacaGTGAAGAAGGTGTGTCGCCATTGGAAGAAACTGATGGTATGTCAATTGAAGGGAAAGAATCACCGACTCAGCAATACGAGCTCAAGTGCAGAAATAAACAAgaacttttaaataataataccgcTGAACCAGTTATAGAGATTTCAACATAG
Protein Sequence
MDLSKSMTDYNPSSSDEGETTLGSGETGVINERCIEIEEQASNIYQEHKSIDDIHPKNHSPQPSIQEKVAAALSSYHEYMETLKQEDPAVEVGTSTSGSPLIRARINIPRGTRFGPFLGRWVGEPHNPRYAWEVRVVRTGVRGWLDGSHDATNWLKYIRSTSIPHEVNMRHVLVGGQVVYETVRYIGEGEELLMGPREPLQLQDMLGENTTDDRTDRETASQHSETVDEDREDEEDCEIRCTVCDKPFQDLDLLDNHLVTGHRYPAEQHICESCPRAYAWRPLLVRHRAIVHGDLRKYPCENCPKKTTQQVFTDPSNLQRHIRTNHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHSTCRMQQNCAKCGQTFSTGTSLSKHKRFCDSTSPSGPSARAPGTMPQMPPSAPNPYMLYQRPSVSLPGVPSFYAPSLMAHYPGIFRHSPFSLNTPLLFPPIQIKEETKHSVSPKKERFSPPQFFPQSNKISPSTAEEATSTSRPSPARPSMQQTPENDVDLIKQERKPMKIKIEPIETSSTTMASTTANTTTTTTTTTTTTTTTTTITEESADQPLDLTVSAKKRPTTTPCKEEECPSPSPIPTIASLELHKDIEQEDEKMEVEVKTISSPQPRVSLPHDHQPSSTPPHMAYPRPIHPMFLEAMYRTPNASFPGFPGAPPPNAPPESRLLPPLHPFGPPRLPFLGSLMNGLSGARPGEGFDLLGRSPLSAFPGVKPFQNAVMAHHHHPHHHHHHHHPPGKIKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKHCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSVVVSVADSPGSSNDNEREDTCFDEIRSFMGKVTYSGDGGYGLQHYPAYMPERLHENKTEVDYDDDEYSEEGVSPLEETDGMSIEGKESPTQQYELKCRNKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01560641;
90% Identity
iTF_01002287;
80% Identity
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