Mhyp000089.2
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- topi
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010000001.1:686043-688317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.13 9.2 6.6 2.5 1 23 231 253 231 253 0.89 2 16 0.028 2 8.7 6.4 1 23 259 282 259 282 0.97 3 16 0.00014 0.01 15.9 0.6 2 21 289 308 288 309 0.93 4 16 1.9e-05 0.0013 18.7 0.4 1 23 316 338 316 338 0.96 5 16 1.8e-06 0.00013 21.9 2.6 1 23 344 366 344 366 0.96 6 16 3.9 2.8e+02 2.0 1.8 2 15 378 391 377 399 0.82 7 16 0.16 12 6.3 3.1 1 23 415 437 415 437 0.97 8 16 0.44 32 4.9 0.4 1 23 443 465 443 465 0.93 9 16 0.00039 0.028 14.6 1.6 1 23 475 499 475 499 0.93 10 16 0.94 68 3.9 0.0 1 20 514 533 514 535 0.86 11 16 0.0015 0.11 12.7 0.1 1 23 540 562 540 562 0.98 12 16 8.4e-07 6.1e-05 22.9 1.7 1 23 568 590 568 590 0.98 13 16 2.8e-05 0.002 18.1 0.6 1 23 596 619 596 619 0.97 14 16 0.013 0.94 9.8 1.1 1 23 625 647 625 647 0.89 15 16 1.5e-06 0.00011 22.1 1.3 1 23 653 675 653 675 0.99 16 16 8e-06 0.00058 19.9 5.0 1 23 681 704 681 704 0.97
Sequence Information
- Coding Sequence
- ATGAATTGGGAATTCGTAAATACAATACCACTAAATAAAGACGTTGAAACTGATGAATACACCATACAGGATTTAATAATCTTGtctcataataatttatctacacctgataaaattaatgaatcggATGGAAATTTTACAAACACACTTTGTTATAAATGCGCTCGTCCAACCATTAatcctatttatttttaccccGATTCAGAGGTGTCGTCAGAACttgctgaaaataataatttcgttGAAATAGAGATTCAACAAGAAACAGACCCTCTATCGAGgcaattatgtaaaaattgcaataatgcATTTGATATAGAGTCTTCACAAGCTAAAGACAAGTTTCCATTAATATTAGATGagacaatattaaatgaagaaaaatttaataatgataataaaaatattgcatgtTTGGGTCGtgagatgaatttaattagtgACGAGGATTCTGACAAAATATCTAAACATGAAatgaatatcataaataatgatgaaaaaaatttattggaacCTATTTCACCAGTAAATCAAACAACGTTTTGTGAAAAACAATTCATGACGTTTCAATGCCTTGGAAATGATCATGAGTATTTAAAATGTAATGCTTGTATGACtcttttttatgatgaaatctCTTTAGATAATCACAAATGCAAACCGTTAATTCCAAACACATCATTAAAATCTTACAAATGTTCAATATGCAATGCGGTATTTTCTCTTGAGGAGTGTTTGAATTTTCATCGtcaatttcatcaaaaatctcacgattttaattgtaatatttgcaATACTAATTTCaagaaagaacaaaaattattctatcatCATAAACGTTATCATTGCAATAGTACAACAATTTCTTGTCTCCAATGTGGAAAACTATTTGATAATCAGTCGCAACTTCGTGCCCATATTTgtaatgatggaaaaatacGACAGCATATTTGTGAAATTTGCAATAAAGGCTTTGCCGATGGCTACACATTAAAACGTCATATTGTCACCCATTTACCAGAGAAACCATTCAAATGCAATCAGTGCACAAAAAGTTTTACACAAAAATCCCGACTCAATAAACACATTGCAGATCATGAAGTAATTATTGAAGAATCACAAACATGCTGGAAGTGTTTAGAATGCGGTATGATATTCCCTAGCTGCAAAGAAGCTGATGAACATTGTGAATATcacgaaaatataataagaataattgaagaattatcaattacaaaaatttatcactGTGAATTTTGCAATAGTTATTTTGACAATGTTCAAACTCTGAAGATTCATCAGAGCAATCATTCAGTAAAAAATCcattcaattgtattatttgtaagatagaatttaaatcatttactGATGTTGTGATACATTGGAAAAAGCATCCacgtatttttaaaattttgactATTTTTACTTGtgatatttgtgataaaaatacaaaagatctggctcttttatataaacataaaagaaaacgACAACATTTTTCTCCGAAAAAgtcttcaattaataataaacaaatgcaaTATTCATGCGAACTTTGTGGtggaatttttgataaattagaaGATATAATAATCCACAGTAAAGTAGCGTGTTCAAAATTTCCATGTGATATTTGTGGTAGTCTTTTACCCACAAATGATTCTCTCGAAGCTCATAAAAGACGTCATAATGGATTACGTCCATACGTTTGTGATATCTGTGGAAAAAGTTATACACAATCAAGTCATATGTGGGCACACAAACGATTTCATATGGGAATAAAACCTTATGCTTGTGaatattgtgataaaaaattcacaataaaaccAGATTTAGCTGATCATACTAGAAAAAAGCACACGCGTGAACGACCATTCAAGTGTGAGATTTGTAATAAATCATTTCTCACTGGATCTGTTTTCTATCAGCATCGTTTGATACATCGAGATGATCGacgatataaatgtaattattgcCGAAAGACATTTGCTAGAACAGAAGCATTGAATAATCATGTTAAAATACATACTGGTGAAAAACCACATGAATGTGCCATTTGCGGACGATGTTTTCGACAAAAAGGTGATATGAGAAAACATAAACGTACCCAACATGCtgttgaaaatgataaattgataatcaatGAACAAATTGTAATGAGCATTGAAGAAATCATAGAAATTATCGATATTCAAGAgccataa
- Protein Sequence
- MNWEFVNTIPLNKDVETDEYTIQDLIILSHNNLSTPDKINESDGNFTNTLCYKCARPTINPIYFYPDSEVSSELAENNNFVEIEIQQETDPLSRQLCKNCNNAFDIESSQAKDKFPLILDETILNEEKFNNDNKNIACLGREMNLISDEDSDKISKHEMNIINNDEKNLLEPISPVNQTTFCEKQFMTFQCLGNDHEYLKCNACMTLFYDEISLDNHKCKPLIPNTSLKSYKCSICNAVFSLEECLNFHRQFHQKSHDFNCNICNTNFKKEQKLFYHHKRYHCNSTTISCLQCGKLFDNQSQLRAHICNDGKIRQHICEICNKGFADGYTLKRHIVTHLPEKPFKCNQCTKSFTQKSRLNKHIADHEVIIEESQTCWKCLECGMIFPSCKEADEHCEYHENIIRIIEELSITKIYHCEFCNSYFDNVQTLKIHQSNHSVKNPFNCIICKIEFKSFTDVVIHWKKHPRIFKILTIFTCDICDKNTKDLALLYKHKRKRQHFSPKKSSINNKQMQYSCELCGGIFDKLEDIIIHSKVACSKFPCDICGSLLPTNDSLEAHKRRHNGLRPYVCDICGKSYTQSSHMWAHKRFHMGIKPYACEYCDKKFTIKPDLADHTRKKHTRERPFKCEICNKSFLTGSVFYQHRLIHRDDRRYKCNYCRKTFARTEALNNHVKIHTGEKPHECAICGRCFRQKGDMRKHKRTQHAVENDKLIINEQIVMSIEEIIEIIDIQEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000766; iTF_01001588;
- 90% Identity
- -
- 80% Identity
- -