Mhyp007516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microctonus hyperodae
Gene Symbol
-
Assembly
GCA_030347285.1
Location
JAQQBR010001831.1:6274479-6281523[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 6.9e-05 0.005 16.9 1.4 1 23 471 493 471 493 0.96
2 13 7.1e-06 0.00051 20.0 1.3 1 20 499 518 499 521 0.94
3 13 2.3e-05 0.0017 18.4 0.7 1 23 527 549 527 549 0.98
4 13 0.00022 0.016 15.3 3.6 3 21 557 575 555 577 0.94
5 13 1.7e-05 0.0013 18.8 4.6 1 23 583 605 583 605 0.99
6 13 1.7e-05 0.0013 18.8 5.3 1 23 611 633 611 633 0.97
7 13 6.6e-06 0.00048 20.1 7.1 1 23 639 661 639 661 0.97
8 13 6.5e-08 4.7e-06 26.4 2.7 1 23 667 689 667 689 0.98
9 13 4.8e-05 0.0035 17.4 6.7 1 23 695 717 695 717 0.97
10 13 1.5e-05 0.0011 19.0 5.8 1 23 723 745 723 745 0.98
11 13 8.9e-06 0.00064 19.7 0.4 1 23 765 787 765 787 0.98
12 13 0.021 1.5 9.1 4.5 1 23 797 819 797 819 0.98
13 13 3.4e-07 2.5e-05 24.2 1.3 1 23 825 847 825 847 0.97

Sequence Information

Coding Sequence
ATGAATAGTGAACAGCATGCATTGCCAGCGACTACGCAGGCACAGCAAGAGGAAGTAAACGTGGGTCAAAGCGGTCGTCCTTATCCAGGTGGTTTAGCTACTGCCACGAGTGTCGGGAATGTAGGGAATACAGCCCCGCATTCGTCCGCGGACCTGCGTGTAGGTACAGCTGTAGCGTTAGCTTCATCAGTAGCTAAATATTGGGTCCTCACCAATCTATTTCCCGGGCCGCTACCCCAGGTCTCGGTTTATCATCATCCCCATCAAAACTCCTCGCACAGGAGCAGTGGTGGTGGAGGTGAACAACCTACCAAAGATCAAGGATCCACGTTGTCACAGGATATGGCGTTGACAACTGGTACACATCATCAAACAACTGCTTCGcatcatcaccatcaacagcagcagcagcaacagcaacaacagcaacagcagcagcaacaacatcaTCAAACTGCAGTTAGCAGTAGTCATCACAACTCATTGCAATCAGCTGGCCAGATTCCAGTCTCTCTTCCTGGTCTCAATTTAGACGGTACACATATACCAACCAGTCATCTACAGGCTGCACACGCTCAGATGCAACAACAATTGCAAtcacaacagcagcaacagcaattGCATCAACCGCAGCAACAACAGTCACATCATCAAATGCAAAATCATCAGAATGTGCAAAACAGTGGATCAAACTCACAGAATCAATCAGGACAGCGCGGCGACGAGAATAAAGTGAAGGATGAAGGAAGTTGCACCACGGAACGCTGTAGTGATAATCAAGTACACTGTCAGGTACAATGTGATCTTCAACTTCAACAATCACAAGAATTACAACAGAGTATGatgcaacagcagcagcagcagcaacaacaacaacaacagcagcagcagcagcagcaacaacagcaacaacagcagcagcagcaaatTGGAGTCAACATCAGTAATAATTCTGGGACCGATAATGggaatcaaaataattcagaGAAGCCGGAAAAGGAAAAGGAAATGCGGCAGCTCAATATGActcaatTTCAAGTACCAGATTTAAAACCCGGTGGTCATATGATGGATGTTAGAACGGCAGATGGCTCGGTGGTTAAAATAAGCGCGGGAAATGAACAAGATCTTGCTAAAACTCTTGGTGTTGAGATGGTACAAAATATGTACAAGGTAAATGTCGAggatataaatcaattattggcTTATCATGAAGTATTTGGTAAATTGCAAAGTGAAATTGCTGCGGGAACAACATTAGTTGGTGGTACAGTACCAACACAAACAGTAACAACAATACAAAATGGTACGCCAATTGTTCAGCAAgtgcaattgaataaatttgatataaaaacaaGTGATGGTGAGGCAACACCAGGTCCAAGTGCATCACCAGTATCAGTTGGCAGTCATGCATGCGAAGTTTgcggaaaaatatttcaatttcgttatcaattaattgtacATCGTCGCTATCACACTGAACGTAAACCATTTACGTGTCAAGTTTGTGGTAAAGCATTTTCAACTGCTGCTGATTTAACACGCCATGGAAAATGTCATCTTGGTGGCTCTATGTTTACGTGCGCAGTGTGCTTTCATGTATTTGCAAATGCACCGTCACTTGAACGTCACATGAAACGTCATGCTACTGATAAACCATATGGTTGCACTGTTTGTGGAAAAAGTTTTGCGCGTAAAGAACATCTTGACAATCATACGCGTTGTCACACGGGCGAAACACCATAcaggTGTCAATATTGTGCCAAGACATTTACACGCAAAGAGCACATGGTTAACCACGTGAGAAAACATACCGGCGAAACGCCACATCGTTGCGACATCTGCAAGAAGAGTTTTACACGTAAAGAACACTTCATGAATCATGTTATGTGGCATACAGGTGAAACGCCACATCATTGCCAGGTATGCGGCAAGAAGTATACCCGCAAAGAACATTTGGCGAATCATATGCGTTCGCATACCAATGACACGCCATTTCGCTGCGAAATTTgcgGTAAGTCCTTCACGAGGAAGGAACACTTTACGAATCACATTATGTGGCATACGGGTGAAACGCCGCATCGTTGTGACTTCTGTTCAAAAACATTCACTCGAAAGGAACATCTATTGAACCATGTACGCCAGCACACGGGTGAATCTCCACATCGGTGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAGCATACAGGTGAGAGCGAGCATCTAGTTAATCATATGCGTTGCCATACTGGCGAGCGTCCATTTGTTTGCACTGAGTGTGGCAAGAGTTTCCCATTAAAAGGAAATCTTCTCTTCCACATGCGTTCACACAACAAGGGCAGTAACGCCGAACGTCCATTCCGTTGCGATCTTTGTCCTAAAGATTTTATGTGTAAAGGACATTTAGTGTCACATAGACGCTCGCATTCAGATGAACGACCGCACAGTTGTCCGGATTGTGGCAAAACATTTGTCGAAAAGGGCAATATGCTGAGACACTTGAGAAAACATGCTGCTGAAGGACCACCAACGCAAGTTAGTACACCATCAGCAATTCCACAACCGGGCGTATTGCCATTACcaactgctgctgctgttctTGTTGGTCATCCATTAGCACCCCCAGCACCACCAGTTGTACCACAGCATACTGTTGTTGTTCCAACACCACCAGGCGTATTGACGTCTTACTGA
Protein Sequence
MNSEQHALPATTQAQQEEVNVGQSGRPYPGGLATATSVGNVGNTAPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHPHQNSSHRSSGGGGEQPTKDQGSTLSQDMALTTGTHHQTTASHHHHQQQQQQQQQQQQQQQQHHQTAVSSSHHNSLQSAGQIPVSLPGLNLDGTHIPTSHLQAAHAQMQQQLQSQQQQQQLHQPQQQQSHHQMQNHQNVQNSGSNSQNQSGQRGDENKVKDEGSCTTERCSDNQVHCQVQCDLQLQQSQELQQSMMQQQQQQQQQQQQQQQQQQQQQQQQQQQIGVNISNNSGTDNGNQNNSEKPEKEKEMRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSTAADLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYGCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGESEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPLPTAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01000745; iTF_01001568;
90% Identity
-
80% Identity
-