Basic Information

Insect: Microctonus brassicae
Gene Symbol: -
Assembly: GCA_940306215.1
Location: OW675804.1:7858416-7866127[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.8e-05 0.0079 16.7 1.4 1 23 480 502 480 502 0.96

2 17 7.9e-06 0.00081 19.9 1.3 1 20 508 527 508 530 0.94

3 17 2.6e-05 0.0026 18.3 0.7 1 23 536 558 536 558 0.98

4 17 0.00024 0.025 15.2 3.6 3 21 566 584 564 586 0.94

5 17 1.9e-05 0.002 18.6 4.6 1 23 592 614 592 614 0.99

6 17 1.9e-05 0.002 18.6 5.3 1 23 620 642 620 642 0.97

7 17 7.4e-06 0.00076 19.9 7.1 1 23 648 670 648 670 0.97

8 17 7.2e-08 7.4e-06 26.3 2.7 1 23 676 698 676 698 0.98

9 17 5.3e-05 0.0055 17.2 6.7 1 23 704 726 704 726 0.97

10 17 4.4e-07 4.5e-05 23.8 2.9 1 23 732 754 732 754 0.98

11 17 6.5e-06 0.00067 20.1 7.8 1 23 760 782 760 782 0.98

12 17 2.1e-05 0.0021 18.5 9.1 1 23 788 810 788 810 0.98

13 17 2.7e-05 0.0028 18.2 7.5 1 23 816 838 816 838 0.98

14 17 0.0013 0.13 12.9 8.8 1 21 844 864 844 866 0.94

15 17 9.9e-06 0.001 19.6 0.4 1 23 872 894 872 894 0.98

16 17 0.024 2.4 8.9 4.5 1 23 904 926 904 926 0.98

17 17 3.8e-07 3.9e-05 24.0 1.3 1 23 932 954 932 954 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.8e-05	0.0079	16.7	1.4	1	23	480	502	480	502	0.96
2	17	7.9e-06	0.00081	19.9	1.3	1	20	508	527	508	530	0.94
3	17	2.6e-05	0.0026	18.3	0.7	1	23	536	558	536	558	0.98
4	17	0.00024	0.025	15.2	3.6	3	21	566	584	564	586	0.94
5	17	1.9e-05	0.002	18.6	4.6	1	23	592	614	592	614	0.99
6	17	1.9e-05	0.002	18.6	5.3	1	23	620	642	620	642	0.97
7	17	7.4e-06	0.00076	19.9	7.1	1	23	648	670	648	670	0.97
8	17	7.2e-08	7.4e-06	26.3	2.7	1	23	676	698	676	698	0.98
9	17	5.3e-05	0.0055	17.2	6.7	1	23	704	726	704	726	0.97
10	17	4.4e-07	4.5e-05	23.8	2.9	1	23	732	754	732	754	0.98
11	17	6.5e-06	0.00067	20.1	7.8	1	23	760	782	760	782	0.98
12	17	2.1e-05	0.0021	18.5	9.1	1	23	788	810	788	810	0.98
13	17	2.7e-05	0.0028	18.2	7.5	1	23	816	838	816	838	0.98
14	17	0.0013	0.13	12.9	8.8	1	21	844	864	844	866	0.94
15	17	9.9e-06	0.001	19.6	0.4	1	23	872	894	872	894	0.98
16	17	0.024	2.4	8.9	4.5	1	23	904	926	904	926	0.98
17	17	3.8e-07	3.9e-05	24.0	1.3	1	23	932	954	932	954	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAACAGCATGCATTGCCAGCGACTACGCAGGCACAGCAAGAGGAAGTAAACGTGGGTCAAAGCGGTCGTCCTTCTTATCCGGGTGGTTTAGCTACTGCCACGAGTGTCGGGAATGTAGGGAATACAGTCCCGCATTCGTCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCTTCATCAGTAGCTAAATATTGGGTCCTCACCAATCTATTTCCCGGACCACTACCCCAGGTCTCGGTTTATCATCATCCCCACCAAAACTCCTCGCATAGGAGCAGTGGTGGTGGCGGTGAACAACCTACCAAAGATCAAGGATCCACGTTGTCACAGGATATGGCGTTGACAACTGGTACACATCATCAAACAAGTGCttcacatcatcatcatcatcaacagcagcagcagcaacagcaacaacaacaacagcaacagcagcaacaacagcagcagcaacaacagcagcatcATCAAACTGCAGTTAACAGTAGTCATCACAACTCTTTGCAATCAGCTGCACAGATTCCAGTCTCTCTTCCTGGTCTCAATTTAGACGGTACACATATATCAACCAGTCATCTACAGGCTGCACACGCTCAGATGCAGCAACAATTGCAAtcacaacagcagcaacagcaattACATCAACCGCAACAACAACAGTCACATCATCAAATGCAAAATCACCAGAATGTGCAAAACAGTGGATCAAACTCACAGAATCAATCAGCACAGCACGGCGACGAGAATAAAGTGAAGGATGAAGGAAGTTGCACCACAGAACGCTGTAGTGATAATCAAGTACATTGTCAGGTACAATGCGATCTTCAACTTCAACAATCACAAGAATTACAACAGAGTATAatgcaacagcagcagcagcagcagcaacagcagcagcagcaacaacagcagcagcagcaacaacaacagcagcagcagcaaatTGGGGTCAACATCACGAATAATTCTGGGACCGATAATGggaatcaaaataattcagaGAAGCCGGAGAAGGAGAAGGAAATGCGGCAGCTCAATATGACtcaatTTCAAGTACCGGATTTGAAACCCGGTGGTCATATGATGGATGTTAGAACGGCAGATGGCTCGGTGGTTAAAATAAGCGCGGGAAATGAGCAAGATCTTGCTAAAACTCTTGGCGTTGAGATGGTACAAAATATGTACAagGTAAATGTCGAggatataaatcaattattggcTTATCATGAAGTATTTGGTAAATTACAAAGTGAAATTGCTGCGGGAACAACATTAGTTGGTGGTACAGTACCAACACAAACAGTAACAACAATACAAAATGGTACGCCAATTGTTCAACAAgtgcaattgaataaatttgatataaaaacaaGTGATGGTGAGGCAACACCAGGTCCAAGTGCATCACCAGTATCAGTTGGCAGTCATGCATGCGAAGTttgtggaaaaatatttcaatttcgttatcaattaattgtacATCGTCGTTATCACACTGAACGTAAACCATTTACGTGTCAAGTTTGTGGTAAAGCATTTTCAACTGCTGCTGATTTAACGCGCCATGGAAAATGTCATCTTGGTGGCTCTATGTTTACGTGTGCAGTGTGCTTTCATGTTTTTGCAAATGCTCCGTCACTTGAACGTCACATGAAACGTCATGCCACTGATAAACCATATGGTTGTACTGTTTGTGGAAAAAGTTTTGCGCGTAAAGAACATCTTGACAATCATACGCGTTGTCACACAGGCGAAACACCATACaggTGTCAATATTGTGCCAAGACATTTACACGCAAAGAGCACATGGTTAACCACGTGAGAAAACATACCGGCGAAACGCCACACCGTTGCGACATCTGCAAGAAGAGTTTTACGCGTAAAGAACACTTTATGAACCACGTTATGTGGCATACAGGTGAAACACCACATCATTGCCAGGTATGCGGCAAAAAGTATACTCGCAAAGAACATTTAGCGAATCATATGCGTTCGCATACCAATGACACGCCATTTCGCTGCGAAATTTGcgGTAAATCTTTCACGAGGAAGGAGCACTTTACGAATCACATTATGTGGCATACGGGTGAAACGCCGCATCGCTGTGACTTCTGCTCAAAAACATTTACTCGAAAGGAACATCTACTGAACCATGTACGCCAGCACACGGGTGAAACTCCTTTCCGTTGCCAATATTGTCCGAAAGCTTTTACGCGAAAAGACCACCTGGTGAACCACGTAAGGCAACATACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACTAAATCGTTCACGCGAAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACATCGATGTCACTTTTGCTCAAAGTCATTTACACGTAAGGAGCACTTGACGAATCATGTTAGAATTCACACTGGTGAATCACCACATCGATGTGAATTTTGCCAAAGGACATTTACCAGAAAAGAACATCTGAATAATCATTTACGACAGCATACTGGGGATTCATCGCATTGTTGCAACGTATGCTCCAAACCATTTACAAGAAAGGAGCATCTGGTTAATCATATGCGTTGTCATACTGGCGAGCGTCCATTTGTTTGCACTGAGTGTGGCAAGAGTTTTCCATTGAAAGGAAATCTCCTTTTCCACATGCGTTCACACAACAAGGGTAGTAACGCCGAACGTCCATTCCGTTGTGATCTTTGTCCTAAAGATTTTATGTGCAAAGGACATTTAGTGTCACATAGACGCTCGCATTCAGATGAACGACCGCACAGTTGTCCGGATTGTGGCAAAACATTTGTCGAAAAGGGTAATATGTTGAGACACTTGCGAAAACATGCTGCTGAAGGACCACCAACACAAGTTAGTACACCATCAGCAATTCCACAACCGGGCGTATTACCATTGCCAACTGCTGCTGCTGTACTTGTTGGTCATCCATTAGCACCCCCAGCACCACCAGTTGTACCACAACATACTGTTGTTGTTCCAACACCACCAGGTGTATTAACGTCTTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVNVGQSGRPSYPGGLATATSVGNVGNTVPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHPHQNSSHRSSGGGGEQPTKDQGSTLSQDMALTTGTHHQTSASHHHHHQQQQQQQQQQQQQQQQQQQQQQQQHHQTAVNSSHHNSLQSAAQIPVSLPGLNLDGTHISTSHLQAAHAQMQQQLQSQQQQQQLHQPQQQQSHHQMQNHQNVQNSGSNSQNQSAQHGDENKVKDEGSCTTERCSDNQVHCQVQCDLQLQQSQELQQSIMQQQQQQQQQQQQQQQQQQQQQQQQQQIGVNITNNSGTDNGNQNNSEKPEKEKEMRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSTAADLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYGCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPLPTAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01002257;
90% Identity: iTF_00997203;
80% Identity: -