Basic Information

Insect: Microctonus brassicae
Gene Symbol: L
Assembly: GCA_940306215.1
Location: OW675805.1:584328-589900[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.9e-06 0.00029 21.2 0.9 1 23 95 117 95 117 0.98

2 16 0.38 39 5.1 3.9 1 23 123 145 123 145 0.97

3 16 6.2e-07 6.3e-05 23.3 2.3 1 23 151 173 151 173 0.99

4 16 5.8e-05 0.0059 17.1 0.9 1 23 179 201 179 201 0.98

5 16 0.0028 0.29 11.8 2.6 1 23 374 397 374 397 0.93

6 16 0.68 70 4.3 0.1 2 23 408 430 407 430 0.87

7 16 0.48 49 4.8 0.0 3 23 489 509 488 509 0.97

8 16 0.0024 0.25 12.0 0.5 3 23 523 543 521 543 0.96

9 16 0.68 69 4.3 2.4 1 23 552 575 552 575 0.92

10 16 0.66 67 4.4 1.2 1 23 580 603 580 603 0.91

11 16 0.36 36 5.2 3.0 1 23 679 701 679 701 0.96

12 16 0.0047 0.48 11.1 3.1 1 23 706 729 706 729 0.94

13 16 0.1 11 6.9 0.3 2 23 785 808 784 808 0.89

14 16 0.00024 0.024 15.2 1.9 1 23 826 848 826 849 0.95

15 16 0.04 4.1 8.2 0.1 1 23 858 881 858 881 0.81

16 16 0.013 1.3 9.8 7.9 1 23 1088 1110 1088 1111 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.9e-06	0.00029	21.2	0.9	1	23	95	117	95	117	0.98
2	16	0.38	39	5.1	3.9	1	23	123	145	123	145	0.97
3	16	6.2e-07	6.3e-05	23.3	2.3	1	23	151	173	151	173	0.99
4	16	5.8e-05	0.0059	17.1	0.9	1	23	179	201	179	201	0.98
5	16	0.0028	0.29	11.8	2.6	1	23	374	397	374	397	0.93
6	16	0.68	70	4.3	0.1	2	23	408	430	407	430	0.87
7	16	0.48	49	4.8	0.0	3	23	489	509	488	509	0.97
8	16	0.0024	0.25	12.0	0.5	3	23	523	543	521	543	0.96
9	16	0.68	69	4.3	2.4	1	23	552	575	552	575	0.92
10	16	0.66	67	4.4	1.2	1	23	580	603	580	603	0.91
11	16	0.36	36	5.2	3.0	1	23	679	701	679	701	0.96
12	16	0.0047	0.48	11.1	3.1	1	23	706	729	706	729	0.94
13	16	0.1	11	6.9	0.3	2	23	785	808	784	808	0.89
14	16	0.00024	0.024	15.2	1.9	1	23	826	848	826	849	0.95
15	16	0.04	4.1	8.2	0.1	1	23	858	881	858	881	0.81
16	16	0.013	1.3	9.8	7.9	1	23	1088	1110	1088	1111	0.95

Sequence Information

Coding Sequence: atgtTATTCAAGGGTAATAGTTCACGATTGGAATTTCTTATTGAAAGAATTCAAGCGCACAAAGAATCACCATCACCACTTACCGATGAAAAATGCCTTTCACGATCAAAagaAGGAACAATGGTTAATGGAAGTTTTTCATGGCGCAGTGAGGAAGACAGTCTTAGAGGTGGTGGTACACCTTCATCATGCACAACATCAACATCAATGAGCTTTGCATCGGAGCctgatattgatattgatacaTTACGAATGGGCGATGCAAATATTATAACTGGACCTTATCCATGTCAATTTTGTGATAAATCATTTCCGACATtgagtttattaaaaaaacatgaaCAGAGTCATGGTGATCAAATGCCATATCGTTGCAGTTGGTGTGCAAGATTATTTAAGCACAAACGTAGCAGAGATCGGCATGTGAAATTACACACTGGTGATAGACGATATCGTTGCACTCAATGTGAAGCAGCATTTTCACGAAGcgaTCACTTGAAAATTCACATGAAGACACATGACAATCAAAAGCCTTATCATTGCACTGAATGTTCACGAGGTTATAATACAGCAGCAGCATTGACATCTCATATGCAATCGCATAAACGTTCACAATCGTCAAATAGTCAATAtacaagaataataaatgatgatagaCGTAGTGTATCATGGCCAAGTGGTGgtgcatcatcatcaccaattgttaattcatcattttcaaatattccattgtctacaatacaaaaaaaaatgtcatcaagttattcatttgattcaataattaatgatcaATCAAATAATCCATTTGCCAAATCATCAATGACATTGGCATGTATGTATTGTGCTAAAGACACATTTATCAGTATGGAACAACTTCAATTGCATGTTTATAAAACGCATGAGGGAATTTTGAATGGTAAAAGTCCATCAATATCACCAATTGAtcttaatgattataattcaaagcgtttgaaaaaaaataatgataaattagaATTGGAAACTATcgccatcaccaccaccaccactactactactactactactactactactactgctgCTACTACCCCTATTGCTGCTGCAATAAAAGATAAATCAGTTGTCAATAAAGAATCGTTTGACTGCAAACATTGCACAatgaaatttacaaaaataaatttattacaaaatcacATGACAGAAGTTCATCGTGATAATATTGCAACTGGATCAATATTATCGTGTCCATTGTGTGGTATTCCATGTGATTCAACTGCATCATACGTCGAGCATTACGTTCTTGAACACTGTAATAATCCAAAAATTCCAACTGAAAAAAATCTAGACGATAGTCCATCAAAAAgatttaatgaaaaagaaaatgatgtaTCAAAACATCAAAGTTCCActttaataaaagaatatacaatgaaaaatacacaagtaaataatactgataaatattcatctaaTACATTACTTTGTGGACAATGTGGTGCTGCattagaaaattttgaatcattTAGAGCACATGTAGCGATGCATCTCCaagtaaataatcaattaaaatcaaatggAATAAATTGTCCAAAGTGTAATTCAACTTTTGAATCGCGTGACGATATGATTAGTCATTTAACAAAACATTATCTTGGACAACCAATGAAGCAATATTCATGTGATGcttgtgataaatattatcttgACTGTGAATCACTCAAGAAACATCTCTTTGAATCACACTCACATCATTTGTATAGATGCACTCTTTGCCATGATACATTTGACTCGAGTATTGCCATTCAAGTGCATTTCACCGTGAAGCATGTACATGAGTGCAATGTATATCAATGCAATGGATGCAGTATAAATTCAAAAGGTCGAGACGAGTCTCATGAGAGTACATTACAGATGAGTGGTAGTGTCTTTAAAAGTGCTACAGAAATGATGAAGCATGTGGAGAATGTACATGCTAAAAGTAAATCATACATGAATGAACTTTCATCACCGGGAAATGCTGTCTCGACACCTGCTGGTGTTATTGGTGGATTATTTCGTTGTTGTTTTTGTGGTATTTATTGTACTTCAGATGTTGATTTACAATTACATCTTGGTAGTCACTCCACTTGCCTTTATCGATGTCCAATATGTCATGAAGGTTTtactgttgaatttttattagacAAACATATTGCTCATTGTCacagtattataaataataataacacaatGGAGTgtaagaaattatattattcatcggAGCAAGAAGAaaagATGAGGAATAAACGACAACGTTCAccaaatgttaataataattttaataaattggaGAATATAAAAAGGCCAAATAGTGGGAATATTGATTGTCAACGTTGTGAATATTGTGATAAAACAGATTTTTCAAGTGATGCTGAATTGCGAGCACACAAAAAACTCGCGCACAAAACTATATCAGCGTTGAATACAAAatcacaaacaaaattattatcgcaGCATGTATGCAGTTATTGCGGTGAAAGTTTGCGTACGAGGTTGGAATTAGAGGCGCATACACGACTGCATCATGCGCCAAATGAACAAGGCAAACGTTACAAGTGCAATATATGCGATGAAATATTTGCCACTGGTGGTATATTAGCTGAGCATAAATTACGAaaacattgtaaaataaaattgagcgATGTATGCATTGTTTGTCgtggtgaattaaaaaatgaaacagatttttttcatcacgtaCAAAAACACAGTTTGGAAACATTTGATCCACAACATCAacgaaatgataataatgctgCAGTATCTCATATAACAGCACATTGTGTTGTATGCAGACAAACGTTAATTAGTGAATTGGAATGTCAATTACATGCCAAGTatcatttacaaaataatataattaacaatgataatgataaaattcaatgttGTTGCATTTGTCTTCGTGAATTTTGTGATGAAGAtgatggaattaatttattatcaaaatgtaTTACAATGAGTGAACAACAATTAAGGGTGTGTAAACGTTGTTATATGAGACATTCGCAGGGTTTACCAATTTTGGGTTCGCTTGCAAATAATTGGAGTGACATTGGAATAATCGATGATGATGGGGATAAAAtcgataatattatgaatggcaagggaattaataatgattgtaaaataaatttgatcaAGTATGAAAGTTATGATGGTAGTTGCGATGATGGTGAAAATATTCCgttgaattttgataatgatacCGTGAATTTAAATGTTTCTGGCATCCGTCCATATTGCTGTAATCATTGCACTCTCAAGTTCACCTTTAGAACTGAATTGGAGCGTCATGTTACTATTCAtcatgacaataataaagccACGATAGCGTCTTCCTTCTCTGTCTCCTCCTCAACATTACAATTCAGCATTCAACAAAAGACATTGGCAGGCCATTCGCAAACTCAGGAGGACAATAAGACGGTAGAAAATGTTATTGTTAAAGAAGAGATTATTGTTAATCCAGAAGAAGAAATAGAAGAAGTAGAGGAGGATGAAGAAGGTaaagagagagaggaagaaaaagaagatgatgatgatgaagaaggtgACGATGCATCAAAATTCGAtgcaattaattga
Protein Sequence: MLFKGNSSRLEFLIERIQAHKESPSPLTDEKCLSRSKEGTMVNGSFSWRSEEDSLRGGGTPSSCTTSTSMSFASEPDIDIDTLRMGDANIITGPYPCQFCDKSFPTLSLLKKHEQSHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCTQCEAAFSRSDHLKIHMKTHDNQKPYHCTECSRGYNTAAALTSHMQSHKRSQSSNSQYTRIINDDRRSVSWPSGGASSSPIVNSSFSNIPLSTIQKKMSSSYSFDSIINDQSNNPFAKSSMTLACMYCAKDTFISMEQLQLHVYKTHEGILNGKSPSISPIDLNDYNSKRLKKNNDKLELETIAITTTTTTTTTTTTTTTAATTPIAAAIKDKSVVNKESFDCKHCTMKFTKINLLQNHMTEVHRDNIATGSILSCPLCGIPCDSTASYVEHYVLEHCNNPKIPTEKNLDDSPSKRFNEKENDVSKHQSSTLIKEYTMKNTQVNNTDKYSSNTLLCGQCGAALENFESFRAHVAMHLQVNNQLKSNGINCPKCNSTFESRDDMISHLTKHYLGQPMKQYSCDACDKYYLDCESLKKHLFESHSHHLYRCTLCHDTFDSSIAIQVHFTVKHVHECNVYQCNGCSINSKGRDESHESTLQMSGSVFKSATEMMKHVENVHAKSKSYMNELSSPGNAVSTPAGVIGGLFRCCFCGIYCTSDVDLQLHLGSHSTCLYRCPICHEGFTVEFLLDKHIAHCHSIINNNNTMECKKLYYSSEQEEKMRNKRQRSPNVNNNFNKLENIKRPNSGNIDCQRCEYCDKTDFSSDAELRAHKKLAHKTISALNTKSQTKLLSQHVCSYCGESLRTRLELEAHTRLHHAPNEQGKRYKCNICDEIFATGGILAEHKLRKHCKIKLSDVCIVCRGELKNETDFFHHVQKHSLETFDPQHQRNDNNAAVSHITAHCVVCRQTLISELECQLHAKYHLQNNIINNDNDKIQCCCICLREFCDEDDGINLLSKCITMSEQQLRVCKRCYMRHSQGLPILGSLANNWSDIGIIDDDGDKIDNIMNGKGINNDCKINLIKYESYDGSCDDGENIPLNFDNDTVNLNVSGIRPYCCNHCTLKFTFRTELERHVTIHHDNNKATIASSFSVSSSTLQFSIQQKTLAGHSQTQEDNKTVENVIVKEEIIVNPEEEIEEVEEDEEGKEREEEKEDDDDEEGDDASKFDAIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01000846;
90% Identity: iTF_01002346;
80% Identity: -