Mbra002824.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675802.1:10574189-10580755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0044 0.45 11.2 0.4 2 21 140 159 139 164 0.92 2 18 2.5e-05 0.0026 18.3 2.7 2 23 167 189 166 189 0.96 3 18 0.079 8.1 7.3 9.8 1 23 199 222 199 222 0.94 4 18 8.4 8.6e+02 0.9 0.2 5 17 535 547 534 551 0.85 5 18 1.8 1.8e+02 3.0 0.1 3 23 562 582 561 582 0.95 6 18 0.00051 0.052 14.2 0.6 1 22 702 723 702 723 0.95 7 18 0.0028 0.29 11.8 0.0 1 23 732 755 732 755 0.95 8 18 0.53 54 4.7 2.8 5 23 768 787 765 787 0.91 9 18 0.12 13 6.7 0.5 2 19 808 825 807 828 0.91 10 18 1.1 1.2e+02 3.6 0.3 2 23 836 858 835 858 0.81 11 18 0.011 1.1 10.0 4.2 1 23 869 892 869 892 0.94 12 18 0.00034 0.035 14.7 0.1 1 21 918 938 918 939 0.95 13 18 0.0035 0.35 11.5 1.5 1 23 946 969 946 969 0.94 14 18 0.00053 0.054 14.1 0.3 1 19 1071 1089 1071 1092 0.94 15 18 0.0026 0.26 12.0 5.3 1 23 1133 1155 1133 1155 0.99 16 18 0.9 92 4.0 1.1 1 12 1167 1178 1167 1181 0.88 17 18 0.0097 0.99 10.1 0.2 3 23 1382 1403 1381 1403 0.95 18 18 1.6 1.6e+02 3.2 0.7 2 23 1490 1512 1489 1512 0.83
Sequence Information
- Coding Sequence
- atggctcgtgttgaaatttataatggaCATTCATCAATCAttccaatattaattcacacaTCTGATTTGGATGgttcgataaaaataaaagaggaaCCACTAGaccatgatgaaaataatgatgaacatTTTCTTCTTGATGCAACAATTGATAAACCCGAGACAAAATTTGCCACGAAAATAGAGAATCATGCAGAGACAAAAGTAaaacttttaaataatattgtaacgTTAAACGTAAATTGTATGACTCCAGATCCGTTATCAACATGTCCAAATAACAGTGAAAATCAtctaaataattctaaaataattagtattaataatattacatcatACAATGATCAAAGCCAAATAGAAATTGGtaatgatttaattgatatgaGATTGCGCACTCGTACTCGATCAAATATTGTAGAATGTGACATTTGTTATATAACATTTGCCGATCAAACATCATTAAGGACACATAAAAGCCGTTATAATAAGCATAATTTAGTATGTCATATTTGTAAATTGTCTTTTACTACACCGATACATTTAACATCTCATCGACGGTCAGTACATCGCGGTGTTAATTGGCGATGTTACATATATGAATGTCATTATTGTAAGCTTGGATTTAGGAGAAAACACGTTTTACAACAACATATATTCCATTGTCacaaagtaaatgaaatttttattaataaacgatCTCGTCGACCGAAAAATCGTTCTATTAAACATACGATAACTTCATCGAAATTAAAATCACCTAATTTACAAcggaacaaaagaaaatgtacTACTCCGATAATAACTAATGATTCGCGAAAGAAGTTAGCGATAAGTTcgaaatcaaatgaatttattttgcaacATGAAGAACagaataatcaatttaataatgatgaacaaacagataatgtaattatattacagcaatcatcatcaatttcaaataGTCAAAATGATcataataaatcattagaTTCATcgccatttttatttaatccgCCGTTAGTTAAAATTTGTGCAGTGCCTAATGAGGTTGAAACTTTATTGAATGATTGTGATGAGACTGATGATAGTTTTAGTGACATCAGTAATAACAGCGATGAcagtaatttttctttaatgacTGATGCCTGTATGGATGATTATTCACcgaaaaaatatactttacgTTCAAGAACAGCAtgtaatatttcatatgatGAAACACCAAATCGTTCGATACAACGAAAATGGGCAATGTTACGAAAACGTTTTAATTGTCGTGATTGTCGAAttgaattgaagaaattaagtcttccattatcaaataataataataaatcatccaatgaaataatgaattatacaaacaCCAAAAATGATGAGactattcaaataaattctagACCAACTGTTGgaatggaattaaaaaatcttGATTTAGCTTTAAAGAAATTACAAGATGTATTTCATAAacaagatgaaataataaataatgattcatATAATTTGCCAGGAGattcacaaaaattaaatgaatctatgaatattaaaaattcttcatcatcTCAAGTCATCGCTGTTGAAGATGTaaccacaaataaaattgtttatatgtcAAGTTTGTGTCAAACTCGATTTaccacaaagaaaaaattaatttttcattatttgtgcTTCCATACAAATCCGCGTTATCAAGACTGCGCTGTTTGTCGATCACAATATACAAACATAGCTGAATTAACTGATCATTTATCGGAACATTGCATTGAAATACCTGAatcacaaaatgaaaaatcgcCACTTGACTCAAAAGGTCCATGCGAAaattgtaaagaaaaatacgCATGTAAAGgttgtaaaatgaaattttggtTAGTGTCACATTTACGAGATCATGAACAACATTGTTCTTTGGcagatcaaataaaaatgaataattcattgaataatattaatgtttatgaaGAAATTGTTGTTGATAAACCATCGGCAAGTGATAATTCTACAGAGACAAAACAAAATGATGATGCTGTTAATTGCAGCACAAAACCATCAGAATTTGTTGATGAATCATctttaactaaaaaatattcgaaaacTGGTGATTCAGAacaattatttacatgtaAAGTCTGTCGTTCAGCATTCAAAACCTCTTCGAATCTTGAcgaacatataaaaaaattttcgttacGTAGAATGAAAAGTTATTATTGTTATCGTTGCGGTACACCATTTCCTTCTGCTGCATTATTGAGTGCACACTCAAGGGCAGCACATTTACCAGAAGCATCAATATCTAAAATTCATTGCATCATTTGTCAGCAAGAATTTAATGTAAGAAGAACATTACGAGAGCATATGATGCACATTCATcgtgaagaattaaaaaaacatattgatGATGTACCAAAAGTTATATGGAATCTTGCAAAAACTTGCAGCATAtgtaaaacaatattttctgATCGTAAACGATTTATTGAACATTCTATGTATTATTACgacgatgaaataattgagTGCAGTATGTGCGGAGAAGTATTTTTAGGACGATATAAGGCACACGCTCATACAAAAATCGTTCATTATTCAGCAGAAATGCGTCAGAGTTATacatattgctgcaatatttgtCTCGAGGGTTTCGTTTATCCATCGCATTTATATTCTCACATGTATCATGTTCATGATACTGAAATTCAACATGAACAAAATATACACGATAATGGAACCAAACATGATAATAATCAGCATGGACTATTTTATATGTGCCGAATTTGTAATGAAACGTTTGATACGCCCACGTTATTGACTGATCATCAAAtggaatattcaaatattggcgattttaattgttcaaaatGTCGGCGAAAATTTCAGACAAATTTATTGTTAGAAAGACACATTGAATTAAGTCACTCTGGTCAGACTCATGTTAACCAAATAGAATGTCATTCATGTCATGAAATTTTACATTCTAAATCATCGTGGCTGTCTCATTTGAAGCACTTTCATATCAATGCTAATGCCGATAATCATCTATCTGAAATGTGGTTACGTAACGATTCTTCTTCGTATAAATCAATGAAGAATCCGTGTGTTACTTCGTTGCCTGTTGATAATTCGGcaagtgaaaatgaaattaataaaactattaaTGCTGTTACTAACGACACGGGTAATAATGAAGACTTACGTGTGTCTAATCAGATGCAAATTGAATATACTTGTGCGTTATGTGAcatgaaatttatcaatagCTCAGAGTTAAAAACTCACTCACTTAAATTTGGTAACACTTGTGTTAATAATACCGGAATagtaaatacaaatttttcaattgccAGTATTTATTCAGTCGAATTAGAAGATTATGAAAATTTGTGCGATACGAAAGATgatggtaattatgaatgcaatcTTTGTAaacgaaaatttaaatttattggacATTATCAAATACATTATAGAAAACATGAAAATCGACAACGTGAAACAACTACACCAGTATATTATTGCAAAACATGcgatgaaaaatttgtttctgaAAGATCGAAGTATTGTCATTTTGCTCATATACATGgtatattgttaaatttacTTCCATCATCTGAGTCAAATATAACACGACGGTCATCACCGCGGCAATCAAAGCCACAGATTcagacaaatttatattcattttttcaacctaATTCAACCGCTGAAGAAtcgaaagaattaaataattttaatcataatatGGAAACACATGTTGACGTTATCCGCGAAAAAGAAGTGTTGAATGATGAATCGAAAACGAACATGAATCCAAATATGATTCCGAATCCGATTGTGCAACAAAATTCtttagaaaatattcataaagatAATTCTACAATACTTGAAAATTCACAggatatttcaaatttatcaattacacCTGTTGTAATTCCGGAGAATTTGTTTGAAGAGCCAATGAAAATTGTAGAAGCAAATAAACAAGTTGTGAAAGGAAATGAAATTGTAATTGAGaatggaaatgaaaatgaaattgtgGATGTTGAAAATGAAATCGTAGAAATcgaagtaataaataaagataaagaaattacagttgatgatgaaattattgaattggaaaatgaatctgcaaataaaaataagtcaGAATTATGTGACGTTTGTGGTGATGCATTTACAAGTAGACAAGACTTATTTGATCATCAAAAAGATTCTCATAATATTGAAGTCATTACAGagtcacaaaataatatacaatgtgaATTCATTGATATCGAATCAATAATTGAGGATGAGCatgaaagtgaaaataataatatggcaacagattttgataataacgacattgatataatttttgatagtACTCGAGCATGTGATGACGATGTTGATGCTGATGATGGTGATGTTAATGAAAAATGCGTAATTGCCCATCCAATAAAACCAGAAAAAActtatttaagaaaaaatcgATTAGAGTGTAAAATTTGTCATATGAAATTccttaatttaaataaattagggGAACATTTAGAAGAACAACATCAAGCAGATTCATCAtccaataatatacaaaatccACGTGTGTCAAGTTCAAgTCCTACAAGATTTCCTCGATTAGTTCCACTTCCAAGgaacacatatattataccaTTTAATCGACaattatcacaaaaaataaatcaacatcaCAATAATGATGCACCACGATAA
- Protein Sequence
- MARVEIYNGHSSIIPILIHTSDLDGSIKIKEEPLDHDENNDEHFLLDATIDKPETKFATKIENHAETKVKLLNNIVTLNVNCMTPDPLSTCPNNSENHLNNSKIISINNITSYNDQSQIEIGNDLIDMRLRTRTRSNIVECDICYITFADQTSLRTHKSRYNKHNLVCHICKLSFTTPIHLTSHRRSVHRGVNWRCYIYECHYCKLGFRRKHVLQQHIFHCHKVNEIFINKRSRRPKNRSIKHTITSSKLKSPNLQRNKRKCTTPIITNDSRKKLAISSKSNEFILQHEEQNNQFNNDEQTDNVIILQQSSSISNSQNDHNKSLDSSPFLFNPPLVKICAVPNEVETLLNDCDETDDSFSDISNNSDDSNFSLMTDACMDDYSPKKYTLRSRTACNISYDETPNRSIQRKWAMLRKRFNCRDCRIELKKLSLPLSNNNNKSSNEIMNYTNTKNDETIQINSRPTVGMELKNLDLALKKLQDVFHKQDEIINNDSYNLPGDSQKLNESMNIKNSSSSQVIAVEDVTTNKIVYMSSLCQTRFTTKKKLIFHYLCFHTNPRYQDCAVCRSQYTNIAELTDHLSEHCIEIPESQNEKSPLDSKGPCENCKEKYACKGCKMKFWLVSHLRDHEQHCSLADQIKMNNSLNNINVYEEIVVDKPSASDNSTETKQNDDAVNCSTKPSEFVDESSLTKKYSKTGDSEQLFTCKVCRSAFKTSSNLDEHIKKFSLRRMKSYYCYRCGTPFPSAALLSAHSRAAHLPEASISKIHCIICQQEFNVRRTLREHMMHIHREELKKHIDDVPKVIWNLAKTCSICKTIFSDRKRFIEHSMYYYDDEIIECSMCGEVFLGRYKAHAHTKIVHYSAEMRQSYTYCCNICLEGFVYPSHLYSHMYHVHDTEIQHEQNIHDNGTKHDNNQHGLFYMCRICNETFDTPTLLTDHQMEYSNIGDFNCSKCRRKFQTNLLLERHIELSHSGQTHVNQIECHSCHEILHSKSSWLSHLKHFHINANADNHLSEMWLRNDSSSYKSMKNPCVTSLPVDNSASENEINKTINAVTNDTGNNEDLRVSNQMQIEYTCALCDMKFINSSELKTHSLKFGNTCVNNTGIVNTNFSIASIYSVELEDYENLCDTKDDGNYECNLCKRKFKFIGHYQIHYRKHENRQRETTTPVYYCKTCDEKFVSERSKYCHFAHIHGILLNLLPSSESNITRRSSPRQSKPQIQTNLYSFFQPNSTAEESKELNNFNHNMETHVDVIREKEVLNDESKTNMNPNMIPNPIVQQNSLENIHKDNSTILENSQDISNLSITPVVIPENLFEEPMKIVEANKQVVKGNEIVIENGNENEIVDVENEIVEIEVINKDKEITVDDEIIELENESANKNKSELCDVCGDAFTSRQDLFDHQKDSHNIEVITESQNNIQCEFIDIESIIEDEHESENNNMATDFDNNDIDIIFDSTRACDDDVDADDGDVNEKCVIAHPIKPEKTYLRKNRLECKICHMKFLNLNKLGEHLEEQHQADSSSNNIQNPRVSSSSPTRFPRLVPLPRNTYIIPFNRQLSQKINQHHNNDAPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000854;
- 90% Identity
- iTF_01000854;
- 80% Identity
- -