Mbra009225.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- MBD-R2
- Assembly
- GCA_940306215.1
- Location
- OW675806.1:2144840-2154519[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.82 3.2e+03 -2.1 0.0 43 72 232 261 232 266 0.84 2 2 2e-17 7.8e-14 51.2 0.1 6 69 560 623 555 633 0.83
Sequence Information
- Coding Sequence
- ATGAAACGGCGGCGAATTACGCGGCGATCGCGTGCTAACAGTAGAGTAGTACTAGTCGCAAGGACATTAAGAATGGCGCGCAAATGTTTGGTGAAAAATTGTGAGATAAACGATGAATCTGTACGTGCAATTGGTTTGTCACTTCATAAATTTCCAAGAGATCCTGTATTGAGAAGCAATTGGTTTATTAATTGTGGCATACAAATGAATCACAGACCGCAATCTATCGAATTTATTTGTCACAGACATTTTTGTCGGAGTGATTATGATGAGCAGAAAGTAAAGACTAATGGTAAACGATTTATTCTAAAAAAAGGTTCATTGCCGACTATCTTcgagaattataataatcatccagatcCTATAATTCCTCTTGGACAAAATTCAAATGTTTCTTATCCACAAGAGGATTTAGATCTTATTAATTCGGAGGTGATGAATCTCAATCATGCAGATTCATCAATGTGTTCAAGCGATACATCAAGAATTTTATCAGAAGTGGACAGAAATTGTTCAGGAGTGAATTCAACGTTAAACTcaacaacaaatttattgaatacgTCTGAACTGTCAGatgtttgtaataataaatgtcatgCAAGTGATATTAATGAAGTTCATAAAATtgagatgaatgaaaatattagagaaaaaattatattaactaAAAATTCATCTGTTGAGCTTCCACCTTTATCAACGATAACAAAACTTGTGAAGAACATTGATCAAACAACAAATGttaataaagaagaaattaaaaatttcaatgttaCAAAATCAGATCGCATTAAGCGAATTGGAAGAAGTGAAAAACTAACAAAAGATGAACAACGCTTGCGAGTTAATAGAAgtggattaaaattttttcccgaCGCCAAATTGGAAGCTAAagatttcaatgaaaaatgGTATGCAGCACGAGTTGTTGAGACAGATTGGGTTGACCGCGAAGTTTTGATACACTTTGACAAATGGAGTTCGAGATTTGATGAGTGGATTCCAATGGACAGTTCACGATTACGGGTACCTCAAATTCCATTAAGagaACCAAAAATGCGTGGGTTTACAGTTGGCGAGAGAATACTAGCAACTTGGGCAGATGGAAGAAAATATCCAGCTAGAGTGAATGCAGTATTAGGAAACGacAGATACGAtgtattatttgatgatggtTATGCAAAAGTAGTACGATCATCTAAAATGACAAAAGTTGCGTCCACAACGACGAAGGCTGTGGACAAAGTTACAGAGTCTGAACCATATATTGGTAGTAAACAAGAACGTAGAGATAAAAAACGAAAACACACAATTATGGAATTGTTTCAACATAAAAGGAGATCAAAACCCGATGGTAGTGCTAGTAGTAGTGCTATCAAAAAAGACGGGAAATCGTATGATGATCgattagtaaatataaatcataataataatggcgATAAAAATGCTGCCGTTGGTGATGGTTACTACGATTCAAGTTCAGAATTGTTACACggttttgaaaataaaaaaccaaaagtgaaaaattattcaagaagAAAACAACGAGAATCATTGGCGAAAACTGTGGATACTGACCATGAGAATGACTCTGGTCCTGAATGGATTGACGGAGAACCACAAGGAATTGAATCATTCGTTGTTGATGGCAATGACGGTTCGCGCCGTTCAATAATTGTGTCAGATAAGAAATTGCCATCTGGGTGgcaaaaacattttatacaaCGTAGAAGTGGAAGTTCAGCTGGAAAATGGgatgttttatttcttcataaattAACTGGAAAGAAATTTCGatcaaaaaatgatattagaatatttttggAGGCTCAAGGCCAAATTGGGTTTGATCCAGATATGTTTGATTTTTGTATTCATCGACGAAAACGGCCTGGTAGTTCAAAATCAAAATCTGATACACCCGTAgaagtgcaaaaaaaaataaaaaccattttACCAAAAACAAAGATTCCTTCTGAAGTGACAgacgatttattattaacttcaGCATACAATACAATAGTTCCAGTTGTGACATCAACTACATCAGTTGACGACAGTgcAGTGTTTATTGGTGGCCTCCGTGTTGAGATGGAAGATAGTGCTTACAAATGTCCAAAAGAGGGATGTTGCAAAACTTTTCGCAAAGAAAATCTTCTTCAAATGcacataaaacattatcatcCTGAATTCTCAAAATATTTAGGATCTACACCAAATGTCGCAGATTTAGCATACGCACGCACAATTGGCGAATCTTTTTTGGATATTACACCTAAAAAAACTTCGAATGTGACTGATAGAGGTGgaaaattggaaaaacgaaaaattggACATGATAAATCTTCAGCTCCTACGCAATTTGCACATTCACCAGGACAATCTGCGTTGTCATCACCCTcactttttgtttctttatcaTCTGCGCatgtaaataatgatattcaaGCAGGAGCTGGCAATTTTCACAATGCAAATATTTCACGTGACGATATGAAATTTGAAATGATGTCACCAGCTTCGAATGCCCATCTCGATATTGATGAAGACATCGGTAAGAAATCCGATGACAACTGTGCAATGTCACCGGGAGCTTTGTTCGATATGCAAAAACGTGAAGTAAAATCACAAATTGGGATTAAAACGTTGTTACCAGTTCGGCCGATCGCACTTTCCACGAGCGACACCCAAAGAAATGAtcgatcaaaattaattaccgttgataatataaatattgaaaagggAAAAGGTTACCGTAAACGACAACTGTCTGAATACAGTTCTGATACATCAACAAAGAGCAAAAGACGACATGTGGGCGTACATGAATTCACAGATGATTATGGAGATTTAGAGGATAGTGCATTAGATGCTGAAGGTCCTGCAGCTCTTGTTTATAGATTCAGTCGTAGAAAATCAGATACGAATAACGACGACAATAGTCAGAGTAGTCAGCTAAACGATTCACATATTGAAAAAAGTGATACTGCGATaacacataataataatgatctaAAAGatGGTGGTGACGGTATCATGATGTTGATTAATGGTGAATTGGTGAAAGTCGAACAATTGCGacgtgaagaaataataaactgTACGTGCGGTTTTATGGAAGAAGATGGGCTCATGATTCAATGTGACCTATGCCTTTGTTGGCAACATGGTCATTGTAATTCTATTGAACGGGAAAAAGATGTgccagaaaaatatatttgctttATTTGTCGTCATCCGTATCGTCAAAGACCATCACAAAAGTATATTCACGATCAGGATTGGATAAAAGAAGGAAAATTACCAAGcTTCTCGAAAAGGACAAAGAATCAGGCTGGTATTAATCAACGAATTGCCATGCTCAAACGTTCTTATGATTTGGTCAGTATACTGCATCAAGTCAAACAAATTCTGCAAAGTTtgagagtaaaaataaatgttgcgCAAAAAAAGGATCATCCAAAGCTATACTTGTGGGCAAAAAATTGGGATAAATCAGATATACCAAAACCCAATGTGGAGCCTGTACCAAtactagaaataattaaaaatgaaccTGAGTCAATGGCAGATGATATGGAAAATAGACAACAAAgtgattcaataaaattagaaaCGAAACCACCAATAAAAGATGATCTTGATGTTAAATCAATAGCATCTGACAcagaattaatgaaaattcttgAAGGTAATACAACAGTGTCGGATGACAcgaagatgatgaaaaatgaagaCATAACAGGGAATAATGATGGGCAAATTTTATTAGACgctttaacaaaaaataatggtcttgattatttgaaatgcaataatgatgaaaaaacgATGGGAATAAAACTTGAGAATACCAATAGGCAGAATCGAGCAACTACtcctaaaaatataaatgaaagtgaAAAATCATTGATGGaaagtaaaaatttgaaatcaaAACATTTTCAACCATTGCAATCATTTATTCCTGAGCCTGAAGCACCAATTGATCCTGCCGAATGCCGTTTACGTTTACTTGAGCATATTGAACATTTTCAAAATCATATTGAAGCACGATTAACAACAGTTGAGGCGCAACTCATCGTTTTAGAAGTCATAGATGACCATAATGAGATTATCGAATCGTCAACATTAGATGTTCATTCTCGGATAAAACAAACCATTCAAATGTTGTTACGAGATCTCAATACTGTAAGAAAGCTGGCGGCTTTATGTTGA
- Protein Sequence
- MKRRRITRRSRANSRVVLVARTLRMARKCLVKNCEINDESVRAIGLSLHKFPRDPVLRSNWFINCGIQMNHRPQSIEFICHRHFCRSDYDEQKVKTNGKRFILKKGSLPTIFENYNNHPDPIIPLGQNSNVSYPQEDLDLINSEVMNLNHADSSMCSSDTSRILSEVDRNCSGVNSTLNSTTNLLNTSELSDVCNNKCHASDINEVHKIEMNENIREKIILTKNSSVELPPLSTITKLVKNIDQTTNVNKEEIKNFNVTKSDRIKRIGRSEKLTKDEQRLRVNRSGLKFFPDAKLEAKDFNEKWYAARVVETDWVDREVLIHFDKWSSRFDEWIPMDSSRLRVPQIPLREPKMRGFTVGERILATWADGRKYPARVNAVLGNDRYDVLFDDGYAKVVRSSKMTKVASTTTKAVDKVTESEPYIGSKQERRDKKRKHTIMELFQHKRRSKPDGSASSSAIKKDGKSYDDRLVNINHNNNGDKNAAVGDGYYDSSSELLHGFENKKPKVKNYSRRKQRESLAKTVDTDHENDSGPEWIDGEPQGIESFVVDGNDGSRRSIIVSDKKLPSGWQKHFIQRRSGSSAGKWDVLFLHKLTGKKFRSKNDIRIFLEAQGQIGFDPDMFDFCIHRRKRPGSSKSKSDTPVEVQKKIKTILPKTKIPSEVTDDLLLTSAYNTIVPVVTSTTSVDDSAVFIGGLRVEMEDSAYKCPKEGCCKTFRKENLLQMHIKHYHPEFSKYLGSTPNVADLAYARTIGESFLDITPKKTSNVTDRGGKLEKRKIGHDKSSAPTQFAHSPGQSALSSPSLFVSLSSAHVNNDIQAGAGNFHNANISRDDMKFEMMSPASNAHLDIDEDIGKKSDDNCAMSPGALFDMQKREVKSQIGIKTLLPVRPIALSTSDTQRNDRSKLITVDNINIEKGKGYRKRQLSEYSSDTSTKSKRRHVGVHEFTDDYGDLEDSALDAEGPAALVYRFSRRKSDTNNDDNSQSSQLNDSHIEKSDTAITHNNNDLKDGGDGIMMLINGELVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNSIEREKDVPEKYICFICRHPYRQRPSQKYIHDQDWIKEGKLPSFSKRTKNQAGINQRIAMLKRSYDLVSILHQVKQILQSLRVKINVAQKKDHPKLYLWAKNWDKSDIPKPNVEPVPILEIIKNEPESMADDMENRQQSDSIKLETKPPIKDDLDVKSIASDTELMKILEGNTTVSDDTKMMKNEDITGNNDGQILLDALTKNNGLDYLKCNNDEKTMGIKLENTNRQNRATTPKNINESEKSLMESKNLKSKHFQPLQSFIPEPEAPIDPAECRLRLLEHIEHFQNHIEARLTTVEAQLIVLEVIDDHNEIIESSTLDVHSRIKQTIQMLLRDLNTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000547;
- 90% Identity
- iTF_01000592;
- 80% Identity
- iTF_01001314;