Basic Information

Insect: Microctonus brassicae
Gene Symbol: -
Assembly: GCA_940306215.1
Location: OW675808.1:4943751-4950068[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.9e-09 1.6e-06 27.8 0.1 5 41 178 215 177 219 0.84

2 3 9.6 8.3e+03 -3.2 0.1 30 39 302 312 302 315 0.79

3 3 8.9 7.7e+03 -3.1 0.3 30 37 629 636 629 637 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.9e-09	1.6e-06	27.8	0.1	5	41	178	215	177	219	0.84
2	3	9.6	8.3e+03	-3.2	0.1	30	39	302	312	302	315	0.79
3	3	8.9	7.7e+03	-3.1	0.3	30	37	629	636	629	637	0.88

Sequence Information

Coding Sequence: atgaaaaatcatttaaaagtGGAATGTGGAAAGGATCCAAGTGAATGCTGTCCGTATTGTCCACATCGAACACGATATAAACGAATATCCTGGATTGAACGGACTGGAGAATTAAATCAGCCATTCAACTGTGGATGGAATAGTGGATtggttaataatatatcaagaAGAGACTTAAGACAGTTGAGGTCACCGAGAATACGACGCAGCACCACTGAAAATATGTGTCCTATATGTAGAAAATCATTTGTCACTCCTGCTAATCTTGCGGCTCATAGACGAAGATATTGCGGTGTTGTTGCTAATATTAAATGCGGTCATTGTGACCATCGGGCAAAGCGAATGTGGGACATGAAAGTTCATCTCAGTGGAAATCATTGGATGAAGtatcagaaaaaaaagacaaagtcAATGGGAACGGCAATCAGTCTTACTCGAGTGGATAAATATCACAGATCATTGGGATATGATCGTTTGGAGCGATGTACCAGGCCACGGAGACGTTATACAAAAATTCACCATCAGTTGAGGATGCAACATGCAATGGATGTTGTAGTGCAAGGAATTATGTCATTGAGATCTGCGGAGAAGAAATTCAATATACCAAGAACAACACTACAGCGTTATATCAAGAAAGgggAGTACAAGATGGCACGCTATGTAAACTACTCAAAGACAACTTATCCATGCCAGAATTGCCATAAAGTCTACAACTATTATTCGAGTTTGGCACGACATCTGAAACATGAGTGTGGCGTTGAACCAAGATTCCATTGTTCTCTATGTCCTTACAAGACTAAACACAGATCAAGCCTTAATACCCATCTCAATGGGAGACATATGAAGAGTTTAAATGACTTTTATATTACGTCAAGTCATAATGGTGGAAATCTCATCGATAgaaaGTCAACGCTACAACATTATACCTATGAGACTCGTGCTTTTCATTGTCCACGCTGCTCGCGAAGTTACAAATACAAACGATCACTTGCACGTCACTTGATCGTGGAGTGTGGAAAGGCACCGCAACTAAAGTGTCCTTATTGTCCTCATTGTAGCAAGTATCGAACGGACATATCTAAACATATTAAATTACGTCATGGCTTTGATCCTTGTTTTAATCCAATGGAGACGTCGTCATGGAGAATCAGTCGAATGCGTAGAATGCGAGGACAAGGATGGCACATGTGTGAAAATTGTGGTCGACGTTATCATCAATCGAAAAATCTCAAACGTCATTTACGAAATGAATGTGGAAAAAGACCAACTTATCAGTGCTCATATTGTCCATATAAAGCAACTTATAAATCTTATCTTGAAATACATATGACAAAACATGGTAGACATGATTTTACACCAAGAGTATCGTGTACAAATCCTTATGGCCAAGGATCaaAACGCAATTACAGCTCATCCAATTGGACTGTGCCAACTTTGCCGCCATCGATATCAaaagataatatttcaacGCGTCGTACCCGTTCCACCACTTTTGGCGATGATTATTTGTTCGGTAATAAAGGACGAATGCGACGACTTGGTCcacgaaaatatttatgcacaGACTGTGGCAATACATTCGCTCTAAAAGCATCATTAACGCGTCATCAATCATTAGAATGTACTCGAGAAATGGCTTTGGACTCAAAGCCCAAGACTACAAAACAACTAAAAACATCAGCGAAGACAATTAAACCATTGATACCAAAAGTAATGAAGACATCAGCccctaaatttatattaccgAAAGTTTCATTGCCAAAAGTAATGGCatcaaaatcatcaattaaatcaGATTCTGATCAACGATTATCATTCAAATCAAAATCTGaatctaagaaaaaaaaacatatgtgCAAACGTTGCGGTCGAGATTATGCATTCTACACATCATTGTGGCGTCATCTTCATTATGAATGCGGCATGGAACCAAAATTTACATGTGAAATATGTCGATTGCGTTTTGCACAAAAAAGTAATCTTGAGCGACATATGAGAAATATGCATTCATCGGCGAATATAACTTTACCTTGA
Protein Sequence: MKNHLKVECGKDPSECCPYCPHRTRYKRISWIERTGELNQPFNCGWNSGLVNNISRRDLRQLRSPRIRRSTTENMCPICRKSFVTPANLAAHRRRYCGVVANIKCGHCDHRAKRMWDMKVHLSGNHWMKYQKKKTKSMGTAISLTRVDKYHRSLGYDRLERCTRPRRRYTKIHHQLRMQHAMDVVVQGIMSLRSAEKKFNIPRTTLQRYIKKGEYKMARYVNYSKTTYPCQNCHKVYNYYSSLARHLKHECGVEPRFHCSLCPYKTKHRSSLNTHLNGRHMKSLNDFYITSSHNGGNLIDRKSTLQHYTYETRAFHCPRCSRSYKYKRSLARHLIVECGKAPQLKCPYCPHCSKYRTDISKHIKLRHGFDPCFNPMETSSWRISRMRRMRGQGWHMCENCGRRYHQSKNLKRHLRNECGKRPTYQCSYCPYKATYKSYLEIHMTKHGRHDFTPRVSCTNPYGQGSKRNYSSSNWTVPTLPPSISKDNISTRRTRSTTFGDDYLFGNKGRMRRLGPRKYLCTDCGNTFALKASLTRHQSLECTREMALDSKPKTTKQLKTSAKTIKPLIPKVMKTSAPKFILPKVSLPKVMASKSSIKSDSDQRLSFKSKSESKKKKHMCKRCGRDYAFYTSLWRHLHYECGMEPKFTCEICRLRFAQKSNLERHMRNMHSSANITLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01000472;
90% Identity: iTF_01000472;
80% Identity: iTF_01001622;