Mbra006872.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675804.1:11997036-11997716[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-12 2e-09 37.1 0.0 2 38 16 52 15 54 0.93 2 2 4.7 4.1e+03 -2.3 0.0 23 32 179 188 179 188 0.82
Sequence Information
- Coding Sequence
- atggtACGAAATTATATACGAAAAACTTTACGTCAATCATGGGATAGACAAAATATGGCGAATGCTATTCAAGCTGTTATTGATGGACGAATGGGTTATAGAAAAGCTTCAAAAACATATTTCGTTCCTCGTACAACTTTAGAGCGACGTgttaaaatgtttaaaattagCCCAGATACGGAATCAGCTACTAAAAAAGGTTTGGGTAAATTCACACcagtatttaataaacaacaaGAAGAAGAACTTGtttcacatttaattaatatggaAAATCAATTGGATGGCTTAACAACAAAAGAATTGCGTATATTAGTTTACCAGTTTgctgaaaaaaatggaattacTCATTCTTTTACAAATGGTATGGCTGGAGTGGATTGGGTTGAACGTTTTCGAAATAGAAATCCAAACTTATCAATACGCAAACCTGAACTAACGTCTATTACACGTGTAATGAGTTTCAATCGCGTTATGGATAATAGTTTTTATGATTTACTGGAAGAAACATTTGAGACATACAATTTAACAAACGCTCGTATTTACAATGTGGACGAAACAACTTCTGTTATATCGTCTGGTGAgcataatcaataa
- Protein Sequence
- MVRNYIRKTLRQSWDRQNMANAIQAVIDGRMGYRKASKTYFVPRTTLERRVKMFKISPDTESATKKGLGKFTPVFNKQQEEELVSHLINMENQLDGLTTKELRILVYQFAEKNGITHSFTNGMAGVDWVERFRNRNPNLSIRKPELTSITRVMSFNRVMDNSFYDLLEETFETYNLTNARIYNVDETTSVISSGEHNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01560360;
- 90% Identity
- iTF_01001999; iTF_01000464;
- 80% Identity
- -