Maet002166.2
Basic Information
- Insect
- Microctonus aethiopoides
- Gene Symbol
- Trl
- Assembly
- GCA_030347275.1
- Location
- JAQQBS010000001.1:20448784-20452351[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-10 4.9e-07 29.7 1.0 16 44 318 346 311 350 0.92 2 3 9.9e-20 4.2e-16 58.7 0.1 16 50 416 450 409 455 0.93 3 3 2 8.5e+03 -3.1 0.4 5 21 466 481 461 482 0.58
Sequence Information
- Coding Sequence
- aTGGGAAGTAGCGGTCAATTGTATAGTTTATCATGGGGAGAATTCAGTTCATCATTGACTTCAGCTGTCCAACTTCTTCGAGGACATGGGGATCTTGTTGATGTTACATTAGCAGCTGGTGGACGAAGTTTTCCAGCACATAAAATTGTTCTATCAGCTGCGAGTCCTTTTTTATTAGACTTACTCAAGAGCACACCATGTCAACATCCAGTTGTTATGCTGGCGGGAATCAGCTCTGATGATCTGGAATCATTATTGGAATTTGTTTATCGCGGTGAGGTGAGCGTTGAACCTTCACAATTGCCATCATTATTGCAGGCTGCTCACTGTTTGAGTATTCACGGATTAACACCGCCGACAATACTGACTGagaATGGTGAAGAAGTACCAGTGTCTTCAATACCAACGAATACCGAACCAGTGACTAGGGAAATTATGAATTCATGTATTCCAATTCATCgtcgaaaaaaaagaagaaagtcTTCGTCGTCTTCAGGCAAATGGCCACGAACGGATAATGTTATTGATAGCGATGATCGACATGATGGACACGGCGATGATGATAGATCTGGTGATTATGAACATGGGAAAGACGACACGGGAAATCCTACCGATGATGttCAGCCCTGCATGGTAACATTGTGTTTGTGTCTGTTGGCAGTGGGTGAGCAGTCGGAAGATTCAAATCATCGTTCCATCAACGATTGGCAACCAACCAAATATCGccgatcatcatcatcatctctaCATTTCACAGACGTGCATTCAATGGATCAGGATCATTTAATTGACACAAAACCATCACGGCAAACACTAAaggcaataaataaacaacagcAGTATTTACCATTGCACATTCCAATGTTTTCTGGTGCATCACTGGCAAAAATAAAGggatataattcatttcaaatggcatcaacatcaacaacaacatcatCTACATCACAAAAAGCCCGCGGTGCATCAGATTGTCCTGGCATTTGTCCATTATGTGGTGCAACATTACGACAAGCAAGAAATCTTCGCAGGCATCTTTTATCATCGTGCAAAtatcgattaaataattttgctcCATTGCAACAACAAGTTGCTGATCAAATGATTGTTGAAATTAAACCGGAAATTGATCCTGATGGTTATATAGGACATAGCAATGAAATTGAAAGTAGAGATAGTGATAGTGaggaaattatttgtaaaccAAGTCCACTTCCATCGCCGACAAATTGTGatGGTCAATTCAAAACTAGAAGTGTATCAGATCAACCAACAACCTGTCCATTATGCGGAGCAATATTACGTCAATCAAGAAATCTCCGTCGACATTTGGAACTCCTTCATTTTGCGCCAGGTAATAATGGTAAACCATCAGTTCGTGTTCGTCGTCGTAAACATGATTTTCATCCACCAACAATGGTACCACGACCTGCCTCACATTCATTAAGAATTGACCACCATCATCCACATCACATGAGAACTTCTGAAAATTCTGATTATTCATCAATGACACCACTGTCACTAACCTCAGCAATAAGTTCAGTATCATCAAATATCCCAGCAAGTTTATTAAGTGCAGGTTCGAATATTCTTGGATCAAATGAACACAGCACAATTTCTGGACCATCGATACCACCGAATTCGTGTGGTAGTTCACTATCAATACCGCCaaataatggaatttattCATCAGACAACGGTGCAAGTATGCTAAGTTGTTTATTACCAAATTTACCGTCATTACCAACATTATCAACTCCACATGATGTTTTTCGTCATGGTGAAATGTTACGCGCTGGTATTGTTTATCATGATTCAACGAGACAACATGTAAGACACATGCAACGAACTAATgtcacgtaa
- Protein Sequence
- MGSSGQLYSLSWGEFSSSLTSAVQLLRGHGDLVDVTLAAGGRSFPAHKIVLSAASPFLLDLLKSTPCQHPVVMLAGISSDDLESLLEFVYRGEVSVEPSQLPSLLQAAHCLSIHGLTPPTILTENGEEVPVSSIPTNTEPVTREIMNSCIPIHRRKKRRKSSSSSGKWPRTDNVIDSDDRHDGHGDDDRSGDYEHGKDDTGNPTDDVQPCMVTLCLCLLAVGEQSEDSNHRSINDWQPTKYRRSSSSSLHFTDVHSMDQDHLIDTKPSRQTLKAINKQQQYLPLHIPMFSGASLAKIKGYNSFQMASTSTTTSSTSQKARGASDCPGICPLCGATLRQARNLRRHLLSSCKYRLNNFAPLQQQVADQMIVEIKPEIDPDGYIGHSNEIESRDSDSEEIICKPSPLPSPTNCDGQFKTRSVSDQPTTCPLCGAILRQSRNLRRHLELLHFAPGNNGKPSVRVRRRKHDFHPPTMVPRPASHSLRIDHHHPHHMRTSENSDYSSMTPLSLTSAISSVSSNIPASLLSAGSNILGSNEHSTISGPSIPPNSCGSSLSIPPNNGIYSSDNGASMLSCLLPNLPSLPTLSTPHDVFRHGEMLRAGIVYHDSTRQHVRHMQRTNVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000892;
- 90% Identity
- iTF_01000892;
- 80% Identity
- iTF_01000892;