Mpol007683.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454415.1:160704269-160714051[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00043 4.4 8.7 0.1 24 47 210 233 198 240 0.77 2 7 0.28 2.8e+03 -0.3 0.0 26 45 240 259 234 268 0.81 3 7 0.19 2e+03 0.2 0.0 22 48 270 295 265 300 0.81 4 7 0.00017 1.8 9.9 0.0 21 48 325 352 313 356 0.85 5 7 0.0069 71 4.8 0.1 21 44 353 376 349 386 0.82 6 7 0.44 4.5e+03 -1.0 0.0 21 30 409 418 402 424 0.83 7 7 0.0019 20 6.6 0.2 21 43 437 459 427 464 0.80
Sequence Information
- Coding Sequence
- ATGTTTGAGGCTCCCGGGTTATCCTCTGATAAACAGGAATCTGACCTAGACAAAGTTTGCAGGAGCTGTTTAGGCAAAAATGGCGAGATGCGTTCACTGTTTGATGCTTGCTTAGATGAAATGTTGCGGAAAGTGGCTGACATCCAGGTGGACATTTCAGATGGCCTCCCGGAACTAATATGCTTCCAGTGTGTTCTGCAAGTCAGCAGAGCATTCCGATTCAAACAACAATGTCAAAATTCCGATAGAATATTGAGGGCCCGCTTCAATCGAAGTCTTCATGAGAAGTCAGATCAGGAAATCGAGGACAACGTTCAGGATACTGAAATTGCAGATTGCTTCGAGCCATCGGAACAAAATTTAGATAGCAATGTTGCTTCCGTTATGACTAGCGATTTCTCAACCAGCAGTATTATAGAATCTTTCGATACTATCAACGAAAAGAAGATCGATGAAGACCATTTTGTCGGAAAGGAAGATTTGTCTATGTCATGTCGAATATTGGAAGAATTTTTAGTGGAGACCGATGAACCAAATACGGTAGAAATGCTAAACACAGTAGAAGAGAATATTGATTTGAATACACAGCTAAGTATACCTGAGACAAAAAAGCAGTCTGTCGACTATACATTCGAATGCAATGTTTGTTATAAGACTTTTACGAAAAAGCATGCATTTCgtcgacatttgaaaattcacgaTCCAATCAAGGCCCATGTATGTAAAGAATGTAATATGTCCTTTACAGAAAGTTCCAATCTTACGAAACACATGAAGCGACACACCGGCGAATTGAGAAATATTACGGGAAAACCAAATTTGTGCACTGTATGCGGTAAAGCATTCAAATGGGCCAGCTCTCTTTCGAAACATATGAATCGTCACACCAAAAAGAAAGTATTGCAATGTCCTCACTGTCCTAAATTCTATTTGGAACGACAAACATTGAAATTGCATATTCGAACCCATACTGGCGAGAAACCATTTGTATGTAACATTTGTGAAAAATCCTTTACTCAAATGTGTAATTTAGAGAAGCATCTACGCGTCCATACGGGGGAGAAGCCATACAAATGTCCTGTATGTGATAAGGGTTTCACTCAAAGTAGTTACATTGCAATTCACATGAGATCGCATACAGGCGAAAAGCCTTACATGTGCGTGGAATGCGGTAAATGCTTTGCAGGATCAAATACCTTAGCCATGCATAAAAGGACTCATACCGGTGAAAAGCCTTATGGCTGTAATATTTGCGGCATGACTTTTGCAAGATTAGAAACGGCCACTGTACATCAACGAACACACACAGGAGAAAAGCCACATTGCTGCCCGATTTGTGATCGAGCATTTAAAAGTTCCAGTCTTCTATCAAATCACAAGCGAACGCATGTTAGCAGCAACGTGTCTCATCAGGATCAAATATCATCAGCCTTCAGgtag
- Protein Sequence
- MFEAPGLSSDKQESDLDKVCRSCLGKNGEMRSLFDACLDEMLRKVADIQVDISDGLPELICFQCVLQVSRAFRFKQQCQNSDRILRARFNRSLHEKSDQEIEDNVQDTEIADCFEPSEQNLDSNVASVMTSDFSTSSIIESFDTINEKKIDEDHFVGKEDLSMSCRILEEFLVETDEPNTVEMLNTVEENIDLNTQLSIPETKKQSVDYTFECNVCYKTFTKKHAFRRHLKIHDPIKAHVCKECNMSFTESSNLTKHMKRHTGELRNITGKPNLCTVCGKAFKWASSLSKHMNRHTKKKVLQCPHCPKFYLERQTLKLHIRTHTGEKPFVCNICEKSFTQMCNLEKHLRVHTGEKPYKCPVCDKGFTQSSYIAIHMRSHTGEKPYMCVECGKCFAGSNTLAMHKRTHTGEKPYGCNICGMTFARLETATVHQRTHTGEKPHCCPICDRAFKSSSLLSNHKRTHVSSNVSHQDQISSAFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00999855;
- 90% Identity
- iTF_00999855;
- 80% Identity
- iTF_00999855;