Mpol023861.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454419.1:350439-351122[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00057 5.9 8.3 0.1 23 46 12 35 9 41 0.88 2 4 8e-05 0.83 11.0 0.0 22 48 39 64 34 70 0.84 3 4 0.0051 52 5.2 0.1 21 46 66 91 64 94 0.91 4 4 0.00021 2.2 9.6 0.2 20 45 93 118 91 122 0.89
Sequence Information
- Coding Sequence
- ATGTATCGTCATATGAAAGGCCACGGCGACATACGACCGCACGAATGCCAAATATGTGGAAAGTCATTTGCCCAAGCCACTAATCTAAATCGACACTATTCCGTTCATAACGGCGATCGTCCATTTCAATGTTCCCTATGCGATAAAACATTCACGCAACAGGGTAATTTACGACGACATGAACTAGTTCACACGGGCGAAAAACCGTTTCGATGCAAACGTTGCGGACGCATGTTTTCACAAAGAATTAATTTGAAGAAGCACGTTATGCTTCATCAAGGCTATCGGCCATATACATGTGAGATATGCAATAAGTCCTTTTTGCAAATGCAAAACTATAAAAACCATTTACAACGGCACGAAGAGGATGGCATAAAAACGGAGGTGGCCGATgtGATGTATGAATGTGCCATATGCGGTGTaggattttcaaattttgccgAATTTCAAGGACATGAAATATTTTGCGAAGTTGCCGGCGAGGAACAAGTGGAGACGTCAACATTCGACACGGAATTGAAACAAGATGAACAAGAGGAGGAAAGTAAAGTGGTTTTGCAGCTGGTGGATTCTGTCACGTTAGCTGAAGCGAGTTATGAGAAGATTTCATAA
- Protein Sequence
- MYRHMKGHGDIRPHECQICGKSFAQATNLNRHYSVHNGDRPFQCSLCDKTFTQQGNLRRHELVHTGEKPFRCKRCGRMFSQRINLKKHVMLHQGYRPYTCEICNKSFLQMQNYKNHLQRHEEDGIKTEVADVMYECAICGVGFSNFAEFQGHEIFCEVAGEEQVETSTFDTELKQDEQEEESKVVLQLVDSVTLAEASYEKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000029;
- 90% Identity
- iTF_01000029;
- 80% Identity
- iTF_01000029;