Mpol003281.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microchrysa polita
Gene Symbol
ham
Assembly
GCA_949715475.1
Location
OX454415.1:67373613-67417416[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 2.6 2.7e+02 3.5 3.1 1 23 185 208 185 209 0.93
2 9 0.00031 0.031 15.9 1.5 1 23 215 238 215 238 0.96
3 9 1.2e-05 0.0012 20.3 0.4 1 23 244 266 244 267 0.96
4 9 1.9e-06 0.00019 22.8 1.7 1 23 273 295 273 295 0.95
5 9 4.6e-05 0.0047 18.4 5.0 1 23 301 323 301 323 0.99
6 9 0.00023 0.023 16.3 1.1 2 21 331 350 330 351 0.95
7 9 7.3e-09 7.4e-07 30.4 1.3 1 23 722 744 722 744 0.99
8 9 5.7e-07 5.8e-05 24.5 1.7 1 23 750 773 750 773 0.97
9 9 9.1e-06 0.00092 20.7 4.7 1 23 779 801 779 801 0.99

Sequence Information

Coding Sequence
ATGAATGAGCGCAATAGTAGTGAGCATATGGTGCCTGACATCTCACGATTTTTGGAGTCCAGTCACGTTGACGTACGAGAGAATGGCGTTTTTGCCAAATTGCCCATTCGTCGTGAATCACGGTTTGGACCGTATTCATTGAAACGTGTCGATGAACCGACCGATCCGGATTTCGTGTGGGAGGTTGTTGCCGGAGCTGATTTGAGATCCTGGTGGGAGCCCGTGTCAGATGCGGCGAATTGGCTGAAAAGAATTCGAACAACTCGTAATAGAAATGAAGTGAATATACGTCATTTTATCGGGGGTGGCATAcTGTGGTACGAAGTTTGTCGAGATATTCCAATTGACGGCGAATTAGTCACTGAACCTAAAGTTCCTTTACCATTTTCTCTAGTTATTGTAAATGGATTAGATCGGGAAATCTCTGAAAGTGGATCCCAACATAGTGGAACAACAGGAGAAGACGATTTTAATACATCCGCTGATCTAGTAAGATCGCAAAGCAGTAATCGAGAATTAGGTCGTGATTCGGAAGGAGAAGATGCTATTGACTATCGTTGTGTAGTTTGCGAGAGACAATGCCACGATATTGACCActtAGACGATCATTTGATAGCAGCCCATCATTATCCTAAGGACGCGTATAAATGTGAATTGTGCTCGAAAGCATTTTGTTACCGACCTACGTTATTGCGACACCGTGCTATCGTTCACGGCGAATATCGTAAAtatccctgtgaaaattgtacAAAGGCATTTAGTGATCCGTCAATTTTACAACGTCATATACGTGCGCATCATCCCAGTGCCCGGAGTCACGCATGTCCCGAGTGCGGTAAAACGTTCGCCACCTCATCCGGTCTTAAACAGCATACGCACATCCATTCGTCGGTCAAGCCGTTTCAGTGTGAAGTGTGTTTTAAAGCTTATacacaattttcgaatttgtgcCGCCACAAGCGAATGCATGCCGACTGTCGCAATCAGATCAAGTGTCAAAAGTGTGGACAAAGTTTCAGCACGACCACATCCTTAGTTAAGCATAAACGTTTCTGTGATTCAACCTCAACGGCGGCCCCGTATCCGCATCAATCGTTACACCCACAAATCGGCCCACAACATCAATCACCTCAACAGCCCCCGGCCCAAGGACTACCGCCCCGCATTCCCGATATGGCCACACCACCGAATCCGTTTATGATGTTCCCGAATCCGGCGCATTTCTTCCCACCCGGTTTTCACCCGTATCATCCGTTGCGTAGTATATTCCCGTCCGGCCCGGCACAAGCGTCAGCCTCATTTCCGATGCTTTTTCCAAAGACAAATTTCGATATACAATTGCCCACGGTGGGTGCATCCGCACCCGAAATGGGACGGCTTAGTACGTCTCCTGTTCGGATGCAAATGACGGGACAACCACGAACACCATCTGGCGATGATAGCAAAATTAGCAGTTTCCAAAAGACACCTACTTCGCTGAAGTCAACAATGGATATGCGTCGCGAACCGGATACAAAATTGAACAATAATGAGCGGAGGAGTGAAATATTCTCGCGAGTTAGCAGGAACTCAATGAGTCCCGATGAGATATCTGTGAATGTGGAATCGGATACGAAAGATCGTGCATCTCCAAACGATACGGATAGCGAAAGTATTATTGATGTCAAAGAGGAATGTGTTGCGTTAGATGATAAGAAACCTCTCAACCTGACATCAGCCTCACCAGAACATCAATCAGTCACCGCCACAGAACAACCACTCGATTTATCACTTACCCGTAAACCAAAATCAAACGACAACGATAATACTACCGAATCAGAATCTCCAGCAAAACGTGTGCGTACATCACAATCATCCTCTGGCCAAGCTAGTCCTTCGCCATCCATTACGCCCGGACCAACCCCATCACCCTCACCTCCGGGTCCCCAACTGGTATATCCTACAGCCAATTATCCCCTAATACTTGACGCCATCTATCCACCACATTCGAGACTAGCAGCTCTACAACGATATCCTTTTTTAGGATCAATGGGCGGGCGACCAAACTTTGACCCTGCCGCCGTAATGCGTCAAAACGGTCATCATTTCCCGCCCAAATCGTTTCCGGAGAGTTTACTCGCCAGCGGCATGGTCGGTGCAAGCGTTGGCAAATTGAAAGATCGTTATACGTGTAAATTTTGTGGTAAAGTGTTTCCTCGTTCGGCTAATTTGACACGACATTTGCGTACGCATACTGGCGAGCAGCCCTACAAGTGTAAATATTGTGAACGTTCATTTAGTATTTCGAGCAATTTGCAGCGACACGTGCGTAATATTCACAATAAAGAGCGACCGTTTAGATGCAATCAATGTGATCGTTGTTTTGGACAACAGACGAATTTAGACCGTCATTTGCGCAAACATGATGCCGATGTTCTTGGATTGGGACAAGGACTAGGAGACTCGCCGAGCTCGAACGAGGCGGATCGTGATGAGTATTTTGAAGAAATTCGATCTTTTATGGGCAAAATAACGTATAATGGAATATATCCACCCGGAAGCATACGTCGCGGGGATAATGACGGAGAAGATGGAAGTGATGTAGAAAATGACGTAATGAGTGTAAGAGAACCACTTAACAATAATGACTCAGCAATTGAAATATCGACGTAA
Protein Sequence
MNERNSSEHMVPDISRFLESSHVDVRENGVFAKLPIRRESRFGPYSLKRVDEPTDPDFVWEVVAGADLRSWWEPVSDAANWLKRIRTTRNRNEVNIRHFIGGGILWYEVCRDIPIDGELVTEPKVPLPFSLVIVNGLDREISESGSQHSGTTGEDDFNTSADLVRSQSSNRELGRDSEGEDAIDYRCVVCERQCHDIDHLDDHLIAAHHYPKDAYKCELCSKAFCYRPTLLRHRAIVHGEYRKYPCENCTKAFSDPSILQRHIRAHHPSARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRNQIKCQKCGQSFSTTTSLVKHKRFCDSTSTAAPYPHQSLHPQIGPQHQSPQQPPAQGLPPRIPDMATPPNPFMMFPNPAHFFPPGFHPYHPLRSIFPSGPAQASASFPMLFPKTNFDIQLPTVGASAPEMGRLSTSPVRMQMTGQPRTPSGDDSKISSFQKTPTSLKSTMDMRREPDTKLNNNERRSEIFSRVSRNSMSPDEISVNVESDTKDRASPNDTDSESIIDVKEECVALDDKKPLNLTSASPEHQSVTATEQPLDLSLTRKPKSNDNDNTTESESPAKRVRTSQSSSGQASPSPSITPGPTPSPSPPGPQLVYPTANYPLILDAIYPPHSRLAALQRYPFLGSMGGRPNFDPAAVMRQNGHHFPPKSFPESLLASGMVGASVGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCNQCDRCFGQQTNLDRHLRKHDADVLGLGQGLGDSPSSNEADRDEYFEEIRSFMGKITYNGIYPPGSIRRGDNDGEDGSDVENDVMSVREPLNNNDSAIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00322782;
90% Identity
-
80% Identity
-