Basic Information

Insect: Chloromyia formosa
Gene Symbol: ham
Assembly: GCA_964017055.1
Location: OZ024815.1:139022819-139068532[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4 4.1e+02 2.9 3.0 1 23 185 208 185 209 0.93

2 9 0.00041 0.043 15.5 2.5 1 23 215 238 215 238 0.94

3 9 1.2e-05 0.0012 20.3 0.4 1 23 244 266 244 267 0.96

4 9 1.9e-06 0.00019 22.9 1.7 1 23 273 295 273 295 0.95

5 9 4.7e-05 0.0048 18.5 5.0 1 23 301 323 301 323 0.99

6 9 3.2e-05 0.0033 19.0 0.7 2 21 331 350 330 351 0.95

7 9 1.5e-09 1.6e-07 32.6 1.2 1 23 716 738 716 738 0.99

8 9 5.7e-07 5.9e-05 24.5 1.7 1 23 744 767 744 767 0.97

9 9 9.2e-06 0.00095 20.7 4.2 1 23 773 795 773 795 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4	4.1e+02	2.9	3.0	1	23	185	208	185	209	0.93
2	9	0.00041	0.043	15.5	2.5	1	23	215	238	215	238	0.94
3	9	1.2e-05	0.0012	20.3	0.4	1	23	244	266	244	267	0.96
4	9	1.9e-06	0.00019	22.9	1.7	1	23	273	295	273	295	0.95
5	9	4.7e-05	0.0048	18.5	5.0	1	23	301	323	301	323	0.99
6	9	3.2e-05	0.0033	19.0	0.7	2	21	331	350	330	351	0.95
7	9	1.5e-09	1.6e-07	32.6	1.2	1	23	716	738	716	738	0.99
8	9	5.7e-07	5.9e-05	24.5	1.7	1	23	744	767	744	767	0.97
9	9	9.2e-06	0.00095	20.7	4.2	1	23	773	795	773	795	0.99

Sequence Information

Coding Sequence: ATGAATGAGCGCAATAGTGCAGAGCATTTGGTGCCTGAAATCTCTCGATTACTGGAGACTAGTAACGTTGACGTACGGGAGAATGGCGTTTTTGCCAAATTGCCTATACACCGTGAGTCACGGTTTGGGCCGTTCTCGTTGAAGCGTGTTGATGAACCTACTGATCAGGAATTTGTTTGGGAGGTTATTGCCGGTGCTGAATTAAGATCCTGGTGGGAGCCCGTATCGGAAGCGGCGAATTGGCTGAAAAGAATTCGAACAACACGCAATAGTAGTGAAATTAATATCCGTCATTTCATTGTGGGCGGCATACTGTGGTATGAAGTCTGCCGAGATATTCCAATTGACGGCGAACTAATAACTGAACCTAAAGTTCCTTTACCAATTTCTGTTATTTTTGGAAATGGATTGAATCGAGAAATCTCGGAAAGTGgATCTCAACACAGTGGAACAACAGGCGAAGACGACTTTAATACAACCACCGATCTAGGAAAATCGGAAAGCAATAATCGTGATATAAGTCGTGATTCAGAAGGTGAAGATGTCATTGATTATCGTTGTGTAGTTTGCGAGAGACAATGTCATGATATTGAACACTTGGACGATCATTTGATAGCAGCACATCATTATCCCAAGGACGCGTATAAATGTGAATTGTGCTCGAAATCTTTTTGTTATCGGCCCACACTATTACGACATCGTGCCCTTATACATGGTGAATATCGCAAGTATCCTTGCGAGAATTGCACAAAGgcATTTAGTGATCCGTCAATTTTACAGCGCCACATACGGGCGCACCATCCTAGTGCAAGGAGTCACGCATGCCCCGAGTGCGGTAAAACGTTCGCGACATCATCCGGTCTCAAACAACATACGCACATCCATTCATCCGTTAAGCCATTCCAGTGTGAAGTGTGTTTTAAAGCTTATACGCAATTTTCGAATTTGTGTCGTCATAAACGCATGCATGCCGATTGTCGCAATCAGATAAAGTGTCCAAAGTGTGGACAAAGTTTCAGTACGACTACGTCATTAATTAAGCACAAACGTTTCTGTGATTCAACCTCAACCGCGGCCTATCCGCATCAATCGTTACACCCACCAATTCATCCGCAACACCAGTCGCAACAGCAGCCCACATCGCAAGGATTACCACCTCGCATTCCCGACATGGCGACACCACCAAACTCGTTCTTGATGTTCCCGAATCCAGCGCATTTCTTCCCACCCGGATTCCTTCCATATCCCCGACTAGGCAGCATGTTCCCACCAAGTCCGGCACAGGCGGCCGCTTCATTTCGCATGCTGTTTCCGAAACCAAATATGGAAATTCCACTACCAACTGTTGGCGCATCGGCGCCCGAAATGGGACGAATAAGTACGTCTCCCGTTCGGATGCAAATATCTGGACATCCTAGAACGTCATCGAGTGACGAAAGCAAAATTAGCAGCTTCCAACGGACGCCGTCATCCATGAAGTCTGCAATAGAAGCGGAAACAAAATTCAACAGTGCTGATCGCAAAGTAGGGATATTCCCGCGTTTAAGCAGACACTCAATGAGTCCGGACGAGATATCTGTAACAGTGGAATCTGATACCAAAGATCGTGCATCTCCCAATGATACGGACAGCGAAAGTATTATCGATGTTAAGGAAGAGCGCATCGCGCTAGAAGATAAGaaTCATATCAACGTCACATCCACCTCACCggagcatcaatccactaaCACCGCTGAACAACCATTGGATTTATCTCTCACCCGTAAGCCAAAGTCCAACAACGATATTCCAGAATCAGAATCTCCCGTGAAACGAGTGCGTACGTCACAATCGTCTTCATGTCAGGCAAGTCCTTCGCCATCTGTTACGCCCGGACCAACACCATCTCCTTCTCCGCCCGGTCCCCAATTGGTCTATCCTACTGCCAACTATCCTATGATACTGGACGCCATGTACCAACCACCGTCAGGATTAAGTGCAGCCCTTCAACAGTATCCTTTTTTAGGATCAATAGGCGGGCGACCAAGCTTTGACCCTGCCGCCGTAATGCGTCGAAACGGTCATCGTTTCCCGCCCAACACTTTCCACGAGAGTTTACTGGCGAGCGGTATGGTTGGTGCGAGCGTTGCAAAATTGAAAGATCGTTACACGTGTAAATATTGCGGTAAAGTGTTTCCACGATCGGCGAATCTTACAAGACATCTGCGCACACATACCGGTGAACAGCCCTATAAGTGCAAATATTGTGAACGATCATTTAGTATCTCAAGCAATTTACAGCGTCACGTTCGTAACATTCACAACAAGGAGCGACCGTTTAGATGTAACCTATGTGATCGTTGTTTCGGCCAACAAACAAATCTTGATCGTCATCTCCGTAAGCATGAGGCCGATGTTCTTGGGTTAGGACAAGGTCTGGGAGACTCGCCCAGCTCGAATGAAGCAGATCGCGAAGAAACTTACTTTGACGAAATCCGGTCGTTTATGGGCAAGGTGAGCTATAACGGAATTTACACACCAGTAAGCATACGCGGCGGTGATAACGACGGTGATGACGGTAGCGATGTGGAGAATGACGTTATGAGCGTAAAGGAACCGCTTAATAACaatgactcagcaattgaaatcTCGACATAG
Protein Sequence: MNERNSAEHLVPEISRLLETSNVDVRENGVFAKLPIHRESRFGPFSLKRVDEPTDQEFVWEVIAGAELRSWWEPVSEAANWLKRIRTTRNSSEINIRHFIVGGILWYEVCRDIPIDGELITEPKVPLPISVIFGNGLNREISESGSQHSGTTGEDDFNTTTDLGKSESNNRDISRDSEGEDVIDYRCVVCERQCHDIEHLDDHLIAAHHYPKDAYKCELCSKSFCYRPTLLRHRALIHGEYRKYPCENCTKAFSDPSILQRHIRAHHPSARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRNQIKCPKCGQSFSTTTSLIKHKRFCDSTSTAAYPHQSLHPPIHPQHQSQQQPTSQGLPPRIPDMATPPNSFLMFPNPAHFFPPGFLPYPRLGSMFPPSPAQAAASFRMLFPKPNMEIPLPTVGASAPEMGRISTSPVRMQISGHPRTSSSDESKISSFQRTPSSMKSAIEAETKFNSADRKVGIFPRLSRHSMSPDEISVTVESDTKDRASPNDTDSESIIDVKEERIALEDKNHINVTSTSPEHQSTNTAEQPLDLSLTRKPKSNNDIPESESPVKRVRTSQSSSCQASPSPSVTPGPTPSPSPPGPQLVYPTANYPMILDAMYQPPSGLSAALQQYPFLGSIGGRPSFDPAAVMRRNGHRFPPNTFHESLLASGMVGASVAKLKDRYTCKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCNLCDRCFGQQTNLDRHLRKHEADVLGLGQGLGDSPSSNEADREETYFDEIRSFMGKVSYNGIYTPVSIRGGDNDGDDGSDVENDVMSVKEPLNNNDSAIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00999884;
90% Identity: -
80% Identity: -