Mpol014303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microchrysa polita
Gene Symbol
-
Assembly
GCA_949715475.1
Location
OX454417.1:5324952-5334000[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 4e-06 0.0004 21.8 3.6 1 23 233 255 233 255 0.97
2 12 1.2e-06 0.00012 23.4 0.1 1 23 261 283 261 283 0.98
3 12 0.00027 0.027 16.0 4.3 1 23 289 311 289 311 0.99
4 12 1.1e-06 0.00011 23.5 2.2 1 23 317 340 317 340 0.97
5 12 0.00021 0.021 16.4 6.2 1 23 348 370 348 370 0.98
6 12 2.6e-06 0.00026 22.4 0.5 1 23 377 399 377 399 0.98
7 12 9.5e-08 9.5e-06 26.9 0.8 1 23 405 427 405 427 0.99
8 12 0.00048 0.048 15.3 0.6 1 23 433 455 433 455 0.99
9 12 5.3e-06 0.00053 21.4 1.6 1 23 463 485 463 485 0.99
10 12 0.00044 0.045 15.4 0.5 3 23 495 516 493 516 0.95
11 12 0.00064 0.065 14.9 0.0 2 23 525 547 525 547 0.95
12 12 0.0019 0.19 13.4 0.2 2 23 553 574 553 574 0.95

Sequence Information

Coding Sequence
ATGAATCTCAAAGTGGATATAAACGTTTGTCGAATATGTATGAAATCCGATACGGGCATTTCGATATTCGGCGAACCACAATTGGCGGAGAAGTTCCAGTACGCGACACAGCTGAAGGTCGAACAGAACGACGGTCTCCCCTCCATAATATGCGATCGATGTCTAGCCCGGTTGAAAATCTCCTACGAGTTTCGTCGCCAATCAATCTTATCCGATCGCCACTTGCGTGCTTTCATTCGTAAAATTAATAGCGAATTTAAAGAAGTTGCCAGCTCGTCTGCCACCGATTCAATGTCACTAAACGATGACGAAATGGAACTGCTCCAGGAAGCGGGCTATAAACCAGAAGAATTCGTTATCACGGAACCACCGCCACCACTTATCACTGCCCCTCAGAAAGATACATCCAAAAACGATAACATGCAATTCAACAGTAGCGGCTTGATGTCTTTCATACAATTAGATGAGGAGGACGGCACCGGCTATCGCGTCGCAGAAGAGTTGCATTATCAGGAAACGGAAATCGAATACAAAGATATTGAAGAAGAGACGGGCGAAGCGGAGGAGGAAGTCGACTATCAGGACGATATGGACACGTCACAAGTGGAGACGATTGAAACGGACGGCGAAATGTCAAATATTGAATATTTCCTTGCGAAAAGTGACGATCCTCTTAACAAAGGAAATGCCCGTTCGCACATTTGTACACAGTGTGATAAGGATTTTAGTACAAAAACGAATTTGATGCGACACACCTTAACGCATAACGGTGTAAAGCCCTATGTTTGTACGATTTGCGGAAACGGATTTACGCAGAGTGGATCGTTGAAGCAGCACATGTTGATACATACGGGCGAACGGCCGTATAAGTGTCACGTGTGCTCGCGAGGTTTCACTCAAAGTAAATCGTTGGTGTTTCATATGAGACGACACACGGGCGAGAAACCGTTTACATGCGATAAGTGCGGATTGACTTTTCGACAAAAGGATGGATTGAAGCGACACTATCAAATGAAACATGTCGGCACTTCGACTGAGGCTCACGTTTGTTCAATTTGCCAGCGAACTTTTCATTCGAAATATTCACTGTCGTTGCACATGAAAAAGCATAACGGCAATCAACTTGCCTATCCGTGCGATATGTGCGACAAGCGTTTTTCGTCAAAGGCCTCGCTTGATAATCACGTTCGGCAGCATACCGGCGAGAAACCATTCAAATGCGAGGAATGCGACAAGGAGTTTAGTCGACGGTCGTCACTCATCGCGCATGAAAAGACACATTTGGACACGAAACCGTTTAAATGCAACGAGTGTAGTCAGTTGTTTGCAGATCACGATCAAATGCTGGCGCACATTGAAACGCACAAAATGAAATCGCCCAAAACATTTCAGTGTGGTAAATGTTCTAAAAGTTTTTCAATCAAacGAAATCTCCTCCAACATCTTAGAATCCACAATCGAACTGAACTGACCATGTTTGGCTGTGACGAATGCAATATTGCCTTCACAACGAATCGTGATCTGAAACTGCATCGTTTGAATCAACACAATGAGTCTGTCTCGGACTTGAATGAGTGCGATATTTGTCATATTCCGTTTGTATCGATTGCCGACTTGAATCGTCATATTGACGTCGTTCACGATGCTATCGATGCCGTGTGCGAGCAATGCGATCAACGTTTTGTGTCGAAGAAACTATTGGATGATCACTTGTTGGAGCATGAATTGCATTTGGAGTAG
Protein Sequence
MNLKVDINVCRICMKSDTGISIFGEPQLAEKFQYATQLKVEQNDGLPSIICDRCLARLKISYEFRRQSILSDRHLRAFIRKINSEFKEVASSSATDSMSLNDDEMELLQEAGYKPEEFVITEPPPPLITAPQKDTSKNDNMQFNSSGLMSFIQLDEEDGTGYRVAEELHYQETEIEYKDIEEETGEAEEEVDYQDDMDTSQVETIETDGEMSNIEYFLAKSDDPLNKGNARSHICTQCDKDFSTKTNLMRHTLTHNGVKPYVCTICGNGFTQSGSLKQHMLIHTGERPYKCHVCSRGFTQSKSLVFHMRRHTGEKPFTCDKCGLTFRQKDGLKRHYQMKHVGTSTEAHVCSICQRTFHSKYSLSLHMKKHNGNQLAYPCDMCDKRFSSKASLDNHVRQHTGEKPFKCEECDKEFSRRSSLIAHEKTHLDTKPFKCNECSQLFADHDQMLAHIETHKMKSPKTFQCGKCSKSFSIKRNLLQHLRIHNRTELTMFGCDECNIAFTTNRDLKLHRLNQHNESVSDLNECDICHIPFVSIADLNRHIDVVHDAIDAVCEQCDQRFVSKKLLDDHLLEHELHLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00322744;
90% Identity
-
80% Identity
-