Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024813.1:93929541-93931913[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.6e-07 7.8e-05 24.1 2.8 1 23 229 251 229 251 0.97

2 12 1.2e-06 0.00013 23.4 0.1 1 23 257 279 257 279 0.98

3 12 0.00054 0.056 15.1 1.5 1 23 285 307 285 307 0.99

4 12 2.6e-07 2.7e-05 25.5 1.4 1 23 313 336 313 336 0.97

5 12 0.0007 0.073 14.7 5.3 1 23 344 366 344 366 0.97

6 12 4e-07 4.1e-05 25.0 1.0 1 23 373 395 373 395 0.98

7 12 2.7e-07 2.8e-05 25.5 0.8 1 23 401 423 401 423 0.98

8 12 6.3e-05 0.0065 18.0 1.1 1 23 429 451 429 451 0.99

9 12 5.3e-06 0.00054 21.4 1.6 1 23 459 481 459 481 0.99

10 12 3.9e-05 0.0041 18.7 0.6 1 23 489 512 489 512 0.95

11 12 0.00096 0.099 14.3 0.0 2 23 521 543 521 543 0.95

12 12 0.01 1.1 11.1 0.9 3 23 550 570 549 570 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.6e-07	7.8e-05	24.1	2.8	1	23	229	251	229	251	0.97
2	12	1.2e-06	0.00013	23.4	0.1	1	23	257	279	257	279	0.98
3	12	0.00054	0.056	15.1	1.5	1	23	285	307	285	307	0.99
4	12	2.6e-07	2.7e-05	25.5	1.4	1	23	313	336	313	336	0.97
5	12	0.0007	0.073	14.7	5.3	1	23	344	366	344	366	0.97
6	12	4e-07	4.1e-05	25.0	1.0	1	23	373	395	373	395	0.98
7	12	2.7e-07	2.8e-05	25.5	0.8	1	23	401	423	401	423	0.98
8	12	6.3e-05	0.0065	18.0	1.1	1	23	429	451	429	451	0.99
9	12	5.3e-06	0.00054	21.4	1.6	1	23	459	481	459	481	0.99
10	12	3.9e-05	0.0041	18.7	0.6	1	23	489	512	489	512	0.95
11	12	0.00096	0.099	14.3	0.0	2	23	521	543	521	543	0.95
12	12	0.01	1.1	11.1	0.9	3	23	550	570	549	570	0.95

Sequence Information

Coding Sequence: ATGAATCTTAAAGTGGATATAAATGTTTGTCGGGTATGCATGAAATCTGACACGGGCGTTTCGATATACAGCGAGCCAAATTTGCCCGAGAAATTCCAGTACGCAACGCAGTTGAAGGTGGAAAACAACGACGGTCTTCCATCGATAATATGCGAGCGTTGTTTGGCCCGCTTGAAAATCTCCTATGAATTCCGCCGTCAGTCGATCCTCTCCGATAGACATTTGCGCGCATTCATCAGGAAGATAAACAGCGAGTTCAAAGAAGTAGCAAGCACGTCAGCCACAGATACAATGGCACTGAACGATGATGAAATACAACTGCTTCAGGAGGCGGGTTATAAGCCTGAAGAATTCATTATGGACGAACCGACACCTGCTGCCGAAAGCTCCAATAAAGGACAAACTAAAAACGAAAACATTCAATTTAACATTGCCGGATTGGACACCTTTATCCAAGAAGACGATGGCGGCAATTATCGGGTTGAAGAAATGCAATATCACGAGACTGAAGTCGAATACAAAGATATTGAAGAAGAGgcggaggaagaggaggaagaagaagacgagTTCCACGACATGGAAGCAACACAAATGGAAACAATCGAAACGGACGGTGAAGCGACCAATATTGAATATATAGTGACCAAGGCTGAGGATCCATTGTCGAAAGGAAATGCCCGTTCTCACATATGTACACAGTGCGATAAAGATTTTAGcacaaaaacaaatttgatGCGACACATATTAACGCATAGTGGTGTAAAGCCTTATGTTTGCACTATTTGCGGCAACGGATTCACTCAGAGTGGCTCGTTGAAACAGCACATGCTCATACATACGGGCGAAAGGCCGTATAAGTGTCAAGTTTGCGCAAGAGGTTTTACACAAAGCAAATCGCTCGTCTTTCACATGAGACGACACACCGGCGAGAAACCCTTCACGTGCGAAAAGTGTGGTTTGACTTTTCGACAAAAGGATGGATTAAAGCGCCACATTCAAATGAAGCACGTTGGCGGATCTACGGAAGCACACATTTGTTCCATCTGTCAGCGTATCTTCCATTCGAAATATTCTCTTTCGCTACACATGAAAAAGCACAACGGCAATCAATGCATATACCAATGTGAAGTGTGCGAAAAACGATTTTCATCGAAATCATCACTTGAGAATCACGCACGACAGCATACAGGTGAAAAACCATACAAATGTGACGAATGCGATAAAGAGTTTAGTCGACGATCATCGCTCTTGGCACATGAAAAGTCCCATATGGAAAATAAACCGTTCAAATGTGACGAATGTTGTAAAATGTTTGCACAACAAGAACAATTGTTAGCGCACATTGAAACGCACAAAATGAAATCGCCCAAGACATTTCAGTGCGGTAAATGTTCTAAAAGTTTTTCCATCAAACGAAATCTCCTCCAACATCTTAGAATCCACAATCGAACTGAAGTGACCATGTACAGTTGCGATGAATGCAATATCGCCTTCACCACGAATCGTGATCTGAAATTGCATCGTTTGAATCAGCATGATGAAACTGTATCGGATCTAAACGAATGTGATGTTTGTCATATTCCATTTGTTTCGATAGCCGATTTGAATCGTCACATAGCGGTGGTCCATGATGCTATCGATGCAATGTGCGGGCAATGCGATCAACATTTTGTATCGAAAAAACTTTTGGACGATCATTTATTAGAGCACGAGTTAAATTTGGAGTAG
Protein Sequence: MNLKVDINVCRVCMKSDTGVSIYSEPNLPEKFQYATQLKVENNDGLPSIICERCLARLKISYEFRRQSILSDRHLRAFIRKINSEFKEVASTSATDTMALNDDEIQLLQEAGYKPEEFIMDEPTPAAESSNKGQTKNENIQFNIAGLDTFIQEDDGGNYRVEEMQYHETEVEYKDIEEEAEEEEEEEDEFHDMEATQMETIETDGEATNIEYIVTKAEDPLSKGNARSHICTQCDKDFSTKTNLMRHILTHSGVKPYVCTICGNGFTQSGSLKQHMLIHTGERPYKCQVCARGFTQSKSLVFHMRRHTGEKPFTCEKCGLTFRQKDGLKRHIQMKHVGGSTEAHICSICQRIFHSKYSLSLHMKKHNGNQCIYQCEVCEKRFSSKSSLENHARQHTGEKPYKCDECDKEFSRRSSLLAHEKSHMENKPFKCDECCKMFAQQEQLLAHIETHKMKSPKTFQCGKCSKSFSIKRNLLQHLRIHNRTEVTMYSCDECNIAFTTNRDLKLHRLNQHDETVSDLNECDVCHIPFVSIADLNRHIAVVHDAIDAMCGQCDQHFVSKKLLDDHLLEHELNLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00999840;
90% Identity: -
80% Identity: -