Mdis010039.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010000441.1:2811222-2812451[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-05 0.31 12.6 0.2 21 46 190 214 184 216 0.80 2 4 2.8e-06 0.045 15.3 0.0 20 45 215 240 213 245 0.91 3 4 0.16 2.6e+03 0.0 0.1 27 52 279 301 267 303 0.74 4 4 0.001 16 7.1 0.2 20 49 325 354 313 357 0.85
Sequence Information
- Coding Sequence
- ATGGATAAAACATGTCGAACTTGTCTGAGAACTCAAGACTCTTTGTTTCCCCTATTTGATCAAAAAGATTTACTTGATAGAATCAAGGATATTTCATCTATCCAGTTAACAATAAACTATGGCTATCCATCAAATATTTGTGGTGAATGtatctctaatgttaataaattgTACAATTTTCGTAAAGTAATTCAAAATTCTGAGTTGGAACTTCGTGAAAGATTGGCTGCAGAAGAAAGAGACAAATTTGCATCTAaagataaaaaaatacaaaagcacaatgctgaaaataatgaatttgatgagGAAGATGAAAAACCCTTAATATGTATTAAGACTGAATTAGAACAAGCTGATAATGATCATGTGTGGTCTCCAGAAGCAGCAATAGACAACAATGATTATAATTCAGAGGAAGATCCAATTGATAAAATATTCAGTGATGTTAATATAAGAGGAACTCAAGACTGTTCACGACTTTTATTACGTGTTAAAAAGTGCTATTGTAAAGAATGTGGTATTGAATTTTCATCAAGATTTAAACTCTACAACCATAGGAGAACAAATCATGTAGTGCCAGGAGTGTGTAGCATTTGTGGTATCATTGTTAGGGCTGATAATTTAAGGAGACATGTTCAGTTACACTCGGAAGGACCAGCAACATGCCATCATTGTGGCaaagttttcaaaaattctGAATCTTTAAGAGGTCACTTGCTGATTCATAAAGGCCATATATTCACATGTGAAAAATGTGGTAAAACATCCAAAGTCAGATCTGAACACAGAAGGCATATGAAAACTCATGCAGATCCGGAAATTGGAAAAATGATGTGTAACATATGTGGAAAGAAAGTTAGGGACTTGAAAAAACATATGCATAGTCATACAGGAGCAAGACCTCATATATGTAGTTTTTGTCAAAAAGGTTTCACAAGTCCATATGCTTTGAAGGTACATACTCGACAGCATACAAATGAAAGACCCTATGTTTGCAATATCTGTTCTTCTGCATACCCTCAAAAAGTCTCCTTAGTCTCCCATTTGAAATCCAAACATGGAATCAAGTATGAAAATACAGAATCTACCTAA
- Protein Sequence
- MDKTCRTCLRTQDSLFPLFDQKDLLDRIKDISSIQLTINYGYPSNICGECISNVNKLYNFRKVIQNSELELRERLAAEERDKFASKDKKIQKHNAENNEFDEEDEKPLICIKTELEQADNDHVWSPEAAIDNNDYNSEEDPIDKIFSDVNIRGTQDCSRLLLRVKKCYCKECGIEFSSRFKLYNHRRTNHVVPGVCSICGIIVRADNLRRHVQLHSEGPATCHHCGKVFKNSESLRGHLLIHKGHIFTCEKCGKTSKVRSEHRRHMKTHADPEIGKMMCNICGKKVRDLKKHMHSHTGARPHICSFCQKGFTSPYALKVHTRQHTNERPYVCNICSSAYPQKVSLVSHLKSKHGIKYENTEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00965466;
- 90% Identity
- iTF_00999102;
- 80% Identity
- iTF_00999102;