Marg000552.2
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:9954462-9970355[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.43 8.6e+03 -3.2 2.8 47 78 35 66 13 97 0.47 2 5 0.29 5.7e+03 -2.6 2.3 127 150 173 196 117 219 0.57 3 5 2 4e+04 -6.1 7.4 37 94 225 294 184 318 0.55 4 5 4.6e-117 9e-113 377.6 27.5 1 299 344 640 344 641 0.93 5 5 0.14 2.8e+03 -1.6 3.7 220 245 669 694 644 715 0.47
Sequence Information
- Coding Sequence
- ATGGATACATCAGGTGCAGTAGGACGGCGAAGAGTGAATTCACGTGTTAATGCCGAGGATCAAGCTCTGGATCAAATCGCTAAAGAGgcATTGAAAACatccaaaatcaaaaaaacaaataaagcgACAACTGCTTCTAAtgtcaacaataacaacaacaatgacgATACTAACAACAGCAGTAAAACAGCGaacaatatcaacaacaatGCTAAAATCGAATGTAGCGACAGTATTAGCAACAACGCTAACACTAACAGCAATACCAACAACAATATCAGTATTGAAGTGCCAAACGATGAAATCATCGAGGAGTTGTTTGATTTCAGTGATTCCGACTTAAAAGAACTCGATACAAACAACCATGAAAATATTACATGTGACAACAACAATGAAAACATCGATATTAATGGAGAACCTAAGGAAATAAAGgtagaaatgcaaaaaattcttAACGATAACAACAATAACGAAGAAAATGATgaagagcaacaaaaacaacaggtaATAGCAATATTATCTCCAACTGATAACACtgataaacaaataaagaaggaattggaagaaaacttaaaagatacagaattaaattttcaaactaCTTCTCCAAAATCGTCTCTTGCTACCAATTTAAGCAATGACGTAAatgaacattttaataaatctgaTCAACAAAACCAAGTAGAAACTGAAAGTAATAATTGTATCGACAATGATCATACAATTCCCGTAACAATCACCAATAGTAGTTCTTTTGTAACGGAACTtgaagaaaatgataaaatatcatcgtcatcatcatcttcaGCAGACATTAAGTCTAAGCAAACAACAAATGACACTGGTAGTTGTTGTCCAGAGTTCATTAACGTGAGTAAAGAAAGTGCACATAGTACAAAAGATTGTATTTCAACTGCTGCTACTACTGCGAGCAATAATGATGAAGATTTAATGAATAATGATGATGAGGAATATATCGAGCCATATGATGAACTACTAGTTCAATTTCTTGATGAAGCAAATCAAATTGCTGAGGCTAGATTAGCTGCTAGAAGACATGCGAGAGCAGAAGCACGCGAAATACGAATGCGAGAATTAGAACGTCAACAAAAGGAGCAAGAATCTAATGCAGATCGTGTATTTGATATGCATACGAACTCAATTGGAACTACGTCATTATCACATATGCGACTAGGCTTAGGTAGTTCACCAGTTACTGGCTTATTAAACTCCACACGAGGCAATTCTATGTCGTCAAGACGTAGTAGTGAAGATTCTTTGGAAGAGGAAGGCCGTAGTTTAAGAGATATACGTCATGAGCTAAAGGATGTGGAAGAACGATTTCGTAAGGCTATGATAGCAAATGCCCAGTTGGATAATGATCGTGCCTCACAAACATATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATGCACAGTTACAACGTGAATGTAAAGAAAAGACACGCGATTGTAATGGATTGAAACGTTCTTTAGATAAGTTAAGGGAAGAATTAAAACTGGTACAGGGTCAGCTCAATGAGCGTGATACATTGATAGCAGAACAGGGTCTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTAGGTTCAGTACAAGGATCATtagatgtTCGACTTAAGAAATTTAGCGAGGAAAAGCAACAATTACAAGCTGAAGTGCAGCAATTGCAGGAACAATTAGAAACTTATAAAAGTCAGGGTAAGGGGCGTGGTAAAGGTAGTTCTTCAAATGGTCCTATAGGTTCagatgatgatgattatgaagctcaaaGAGAAGCTAATAAAATCATTTCGgactataaatataaattacaaaaagctGAACAGGAAATTGCTAGTCTACAATCAAGTTTAGCACGTTCCGAAACACAAGTAATACGTTATAAAAGTACAGCAGAAGCTGCCGAAAAAGCTGAAGCTGAACTTAAAATTGAAAGAAGAAAACTACAAAGAGAGaatcgCGAAGCGATGGAAAAACTCGAAGAGTTAGAAACATCAAACAATCATCTTTTAAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTCTGA
- Protein Sequence
- MDTSGAVGRRRVNSRVNAEDQALDQIAKEALKTSKIKKTNKATTASNVNNNNNNDDTNNSSKTANNINNNAKIECSDSISNNANTNSNTNNNISIEVPNDEIIEELFDFSDSDLKELDTNNHENITCDNNNENIDINGEPKEIKVEMQKILNDNNNNEENDEEQQKQQVIAILSPTDNTDKQIKKELEENLKDTELNFQTTSPKSSLATNLSNDVNEHFNKSDQQNQVETESNNCIDNDHTIPVTITNSSSFVTELEENDKISSSSSSSADIKSKQTTNDTGSCCPEFINVSKESAHSTKDCISTAATTASNNDEDLMNNDDEEYIEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHTNSIGTTSLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYAQLQRECKEKTRDCNGLKRSLDKLREELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQQLQEQLETYKSQGKGRGKGSSSNGPIGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -