Mcol004079.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- ZBTB41
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000417.1:15648-16817[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00093 4.1 7.6 0.1 25 45 56 76 50 82 0.88 2 8 4.3e-05 0.19 11.9 0.4 17 50 84 116 76 118 0.84 3 8 0.11 4.7e+02 1.0 0.2 26 49 120 142 116 144 0.85 4 8 0.11 5e+02 0.9 0.0 20 52 171 203 167 205 0.86 5 8 0.79 3.5e+03 -1.8 0.1 22 43 201 222 198 227 0.72 6 8 0.0005 2.2 8.5 0.1 24 45 237 258 226 264 0.85 7 8 0.0002 0.87 9.7 0.0 14 47 283 316 278 323 0.82 8 8 0.21 9.2e+02 0.0 0.4 21 35 346 360 334 370 0.75
Sequence Information
- Coding Sequence
- ATGACAACAATACATATCGAGCCAGAGGTGATTAAAACCGAGTTGGACTCCGAGGATCTGCAGGAAAATTTACCGTTAGCTTATCATTGCAAACTATGTAGTGTTTACTTTGCCACACAAGCGTTGATGGATACTCACGAGTTAGAACATAAACCTAAACGAAAAAATACGTGTGACCAGTGTGGACGAGTGTTCAGGACCTACGTTAATTTGAGGAAGCACATGAAGAAACACACAGGACGAAAGGTAAAAagggAGAAAAGTGACGCTGAACTggaatgtaaaatatgtaaaaaagtATTCCGCCATCGAAGCAATTATCAGAAGCATTTATTACGACACACAGCCGGTGATTTAACATGCAAACACTGTCCAAAGAAATTCCGTCTCTTTCGTGACCTTACAAGACATGAAAAAACCCATTTCTATCCTAGTTATATGTGTAAAGAATGTGACTATGAAACGACTGTGCTCGCCGCTCTCAGCATTCATATGGTGAAGCATACGAACAAATCGGATCTTCCATTTAAATGTAATGACTGCGACAAACACTTCAGGAAAGCTATTGACCTACAAGAACACTACAATATTCATTCTGGTGATAAACCATTTGTTTGTCAGTTATGCGGCAGTGCATTCTATCTTCGTCGACAGCTTTCAGCGCATTGTCGACGATTACATCCAGAAATGAAAGCGAATAAAGTCACCAGCACAACTTGTGATATATGTGGTCGTGTTCTTGCAACAAAACGTTCGCTATTCCGTCATAAAGAAAGTCACAATCCTACAAAGCTTTATCTATGTGATTTTTGTGGCAAAAGTTTGAGCAGTGCAGAGCATTTGAAAAAACATCGACGGATACATACTGGGGAAAAACCATATGTTTGTGACATATGCGGCAAAGGATTCACTGATTCCGAGAATTTACGGATGCACAGACGGGTCCATACAGGAGAAAAACCTTACAAGTGTGATCAGTGCCCAAAAGCATTTTCGCAACGATCAACGCTCACGATTCATCGTCGGGGTCATACTGGAGAAAGACCTTATATCTGCCAAATATGTCAACGTGGTTTTTCATGTCAAGGTAATCTCACGGCACATCAGAAAACCACGTGTGTTTGA
- Protein Sequence
- MTTIHIEPEVIKTELDSEDLQENLPLAYHCKLCSVYFATQALMDTHELEHKPKRKNTCDQCGRVFRTYVNLRKHMKKHTGRKVKREKSDAELECKICKKVFRHRSNYQKHLLRHTAGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMVKHTNKSDLPFKCNDCDKHFRKAIDLQEHYNIHSGDKPFVCQLCGSAFYLRRQLSAHCRRLHPEMKANKVTSTTCDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYICQICQRGFSCQGNLTAHQKTTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866161;
- 90% Identity
- iTF_01560620;
- 80% Identity
- iTF_00997206;