Mcol005803.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- Trl
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000771.1:22627-23667[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-20 1e-16 60.8 0.1 16 50 11 45 8 52 0.94 2 2 2.4 1e+04 -3.3 0.3 5 12 61 67 56 73 0.55
Sequence Information
- Coding Sequence
- atgatattattaataatttatGGTCATTACAAAGCTAGGAGTGTATCGGATCAACCAACGACTTGTCCATTATGCGGTGCAATATTACGTCAATCGAGAAATCTACGTCGACATTTGGAACTTCTTCATTTTGCTCCAGGTAATAATGGCAAACCTTCAGTTCGTGTACGTCGTCGTAAGCATGATTTTCATCCACCGACAATGGTACCACGTCCTACTCATTCATTGAGAATCGATCATCATTCACATCAAATGAGAACTACtgaaaattctgaatattcatcaatgacaCCATTATCGCTTACCTCAGCAATGAGCTCAACATCATCGAATATTTCTGGAGGATTGATTGGACCAGGATCAACTATTCTTGGACCAAGTGAACACAGTACAATATCTGGACCATCAATGCCATCAAATTCATGTAGCACTACATTGGCAGGACCACCAAacaatggaatttattcatcagAAAGTGGTGCAAGTATGCTAAGTTGTTTATTACCAAATTTACCTTCATTGCCAACATTATCAACACCACATGATGTTTTTCGGCATGGTGAAATGTTACGCGCTGGTATCGCTTATCACGATTCATCAAGACAACATGCAAGACACATGCAACGAGCCGAtgttacataa
- Protein Sequence
- MILLIIYGHYKARSVSDQPTTCPLCGAILRQSRNLRRHLELLHFAPGNNGKPSVRVRRRKHDFHPPTMVPRPTHSLRIDHHSHQMRTTENSEYSSMTPLSLTSAMSSTSSNISGGLIGPGSTILGPSEHSTISGPSMPSNSCSTTLAGPPNNGIYSSESGASMLSCLLPNLPSLPTLSTPHDVFRHGEMLRAGIAYHDSSRQHARHMQRADVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996706; iTF_01560802; iTF_00687575; iTF_01001759; iTF_00452266;
- 90% Identity
- iTF_00996706;
- 80% Identity
- -