Mcol008955.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010001987.1:10702-13228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.4e-05 0.0041 17.5 2.7 1 23 353 375 353 375 0.98 2 12 0.00058 0.054 14.0 4.4 1 23 379 401 379 401 0.98 3 12 8.6e-05 0.008 16.6 4.4 1 23 406 428 406 428 0.96 4 12 0.00019 0.017 15.5 3.4 1 23 485 507 485 507 0.97 5 12 0.00071 0.066 13.7 1.4 1 23 512 534 512 534 0.97 6 12 0.00026 0.024 15.1 2.3 1 23 585 607 585 607 0.98 7 12 0.0005 0.047 14.1 1.6 2 23 615 636 615 636 0.98 8 12 8.8e-07 8.2e-05 22.8 2.1 1 23 647 669 647 669 0.96 9 12 0.0002 0.019 15.4 1.6 1 23 675 697 675 697 0.97 10 12 0.0001 0.0096 16.3 0.6 1 23 703 725 703 725 0.98 11 12 4.2e-06 0.00039 20.7 2.0 1 23 731 753 731 753 0.96 12 12 7.6e-05 0.007 16.7 0.3 1 22 759 780 759 780 0.96
Sequence Information
- Coding Sequence
- atgaatgtCAGTTACTTTGAACTGCCATCCAACATGGATCGTGTTTGCCGAATTTGTTTGTCTGAGGGTACAAATTTATCGCCGATATTTTGTACCGAACATGATGTAACGAACTTTTCGGATCTAGCACAAAAAATACAAGTTTGTGGCGCTATAGAAATGCATGAAAGAGATGGTTTGCCTTCATTGATCTGTGATGTATGTGTTTACAAAGCAAGCGTCGCTCATGAATTTCGCCAACAGTGCCAGAACTCTGATACACGATTACGATTGTATTATGATAAACCTGCTAGATCTAGTGTTACTAATTCAACGACACAAACTGATTCTCAGTCACGAATTATCgtggcaaaaaaaattgatacatcACAAgcgaattattttgttaagGAAGAAATGCAAGGATTGAGCCAGGAGCTTTCCAATTCGATAGAAGTTTATACTCAAAGTGAGCAGACAGCTGTGGCAGGAGGAAATCATATTGAGACTGAAGAGAAATTGTTTCTCTGTAATATTGGCTTTGGCGGTGCCAAAGAATTAGAAAAAGGCGCTGTGATTTTGGATAACCATCCCGAACAAAATTTAACAACCGATGTATCACAAGTAACGATCGTTGCAACTATGGATACCGAAGAACGTTTAGAGCATGATCAAGTAATAAGTACAATAACggaaatgaaatcaaatgatacaacagatgaatatatcaatacgCATATTTTAACTGCGGGTGTTGGGGATGAAGACgatgatgagaatgatattGCAATCGATAATGACGATGTAGTGGACGATGGtggtgaagatgaagaagacgCGGAAATAGAGACAACAGAACAGGTACAAGTACGTCACGAATCAGAACAATTGGAAAACcatggtgatgatgataatgatgatgaagatatggatgaaaaatggGAGAAAGAAGTTCTGAGACGAAATGGAATTCTACCAAAACGATTGACACGAAATGCAAAGTCGATTGCTAGAAAATCGTCATATGAAATCGCTGAAATGGACGAAGATTCTCAAGAGTGTGATGAAGAGCCgaaattcaaatgtaaaatttgtTCGCGACGTTATACTACGCAGAAAGgattaaaaaatcattcacaagTACACGATAAACAACATAAATGTCCGAGATGTTTCAAATCATTctataaattggaaaatatgaaaaaacatgCGAAAATACATGAATCAAAGCCACATGCTTGTCAAATATGTCATACGTCATTCGCAAAATTACAGAGTTTAACAAGACATCTCAAAACTCACACAGAGAAATCAGCAAATGATGAagtgaaattggaaaatgatgGTATGAAAAATGTCGTTattaaaaaagataaaagtgaaaatgataatacagacgatgatgatgatgatgaacaaacTTGTACACAAAGGAACGAGGCTGATGAATTTGAGAGTGCACCGGATTTATACAAGTGCGATGTATGTAATCAATTTTGttcaactttgaaaaatttgaaacggCATTCAATCGTACAcggtgataaaaaatattcgtgtACAGTGTGTAAAAAATGGTTTTTCCGACCTGACACGTTGAAGAAACACGCAGAGAAACATGGTCACGGATTACTGGATAATTTGGTTGATGAGAATAAACTATATGAATCGGATGATGAATCATTTAATCGTACAGGTAGTGCTGGTGTCATGAGCAGTAATGATGTAAGTAAAAAAGATGATAGTGACGATGACGGTGGATCAGGAGAATATAAATGTCAACATTGTGACAAAATCATGGCAACAAAGAAAGGTTTACGACGGCACGTATCCATGCACAAGCCCAAAGCTGAACCAGCTACATGTGAAATATGCAAGAAGGTCTGCGCAAGTCAAGCGAGATTGGTATTACATCAAAAAACACACAATAAACCAAAGGAAAAAGTTCCACGCGAATATTTGTGTCATATATGCAGCAAAGTTTATCCAAGCAATTCATCATTGACATATCATATGAGAACTCATACGGGTGTAAAACCACACGTGTGTAAAACTTGTAACAGTGGTTTCACAACCACTACAAGTTTAGCTAATCATATAAGAATTCATACTGGTGATAAACCATATGTTTGTCATGTCTGTAGTGCGGCATTTGCCGTAAGTTCGGCATTCAGGCGTCATTTAACTCGTCATACAGGCGAAGCAAATTATTTGTGTAAAACATGTGGAAAGGCATTCAAGAGATTGAGTACATTGAAGGAACACACTTATACACATTCAGGTGAGAAACCATATGTTTGTAAAACATGTGGAGCTGCTTATAGTCACAGTGGCAGTTTATTTGCTCATCAAAAACGTTGTAGAGCTCAGTACGGTGAAATGGTCACTGAAGAACATCACGTTGCACatcatattcatgtgaataacGTGCAGTCAGCAGTACGATCACTCGCCGTAATTGGTCAGATGTTTTAA
- Protein Sequence
- MNVSYFELPSNMDRVCRICLSEGTNLSPIFCTEHDVTNFSDLAQKIQVCGAIEMHERDGLPSLICDVCVYKASVAHEFRQQCQNSDTRLRLYYDKPARSSVTNSTTQTDSQSRIIVAKKIDTSQANYFVKEEMQGLSQELSNSIEVYTQSEQTAVAGGNHIETEEKLFLCNIGFGGAKELEKGAVILDNHPEQNLTTDVSQVTIVATMDTEERLEHDQVISTITEMKSNDTTDEYINTHILTAGVGDEDDDENDIAIDNDDVVDDGGEDEEDAEIETTEQVQVRHESEQLENHGDDDNDDEDMDEKWEKEVLRRNGILPKRLTRNAKSIARKSSYEIAEMDEDSQECDEEPKFKCKICSRRYTTQKGLKNHSQVHDKQHKCPRCFKSFYKLENMKKHAKIHESKPHACQICHTSFAKLQSLTRHLKTHTEKSANDEVKLENDGMKNVVIKKDKSENDNTDDDDDDEQTCTQRNEADEFESAPDLYKCDVCNQFCSTLKNLKRHSIVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLYESDDESFNRTGSAGVMSSNDVSKKDDSDDDGGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLVLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPYVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVTEEHHVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000764;
- 90% Identity
- iTF_00996537;
- 80% Identity
- -