Mcin004846.1
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000121.1:53140-55693[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-05 0.0041 17.4 2.7 1 23 361 383 361 383 0.98 2 12 0.00052 0.045 14.2 3.3 1 23 387 409 387 409 0.98 3 12 9.1e-05 0.0078 16.5 4.4 1 23 414 436 414 436 0.96 4 12 0.0002 0.018 15.4 3.7 1 23 493 515 493 515 0.97 5 12 0.00075 0.065 13.7 1.4 1 23 520 542 520 542 0.97 6 12 0.00027 0.023 15.0 2.3 1 23 594 616 594 616 0.98 7 12 0.00053 0.046 14.1 1.6 2 23 624 645 624 645 0.98 8 12 9.4e-07 8.1e-05 22.8 2.1 1 23 656 678 656 678 0.96 9 12 0.00021 0.018 15.4 1.6 1 23 684 706 684 706 0.97 10 12 0.00011 0.0094 16.3 0.6 1 23 712 734 712 734 0.98 11 12 4.5e-06 0.00039 20.6 2.0 1 23 740 762 740 762 0.96 12 12 8e-05 0.0069 16.7 0.3 1 22 768 789 768 789 0.96
Sequence Information
- Coding Sequence
- atgaatgtCAGTTACTTTGAACTGCCATCCAACATGGATCGTGTTTGCCGGATTTGTTTGTCTGAGGGTACAAATTTATCGCCGATATTTTGTACCGAACATGATGTAACGAATTTTTCGGATCTTGCACAAAAAATACAAGTTTGTGGCGCTATAGAAATGCACGAGAGAGATGGTTTGCCTTCATTGATCTGTGATGTATGTGTTTACAAAGCAAGCGTCGCTCATGAATTTCGCCAACAGTGCCAGAACTCTGATACACGATTACGATTGTATTATGATAAACCTGCTAGATCTAGTGTTACTAACTCAACGACACAAACTGATTCTCAGTCACGAATTATcgtggcaaaaaaaattgatacatcACAAgcgaattattttgttaagGAAGAAATGCAAGGATTGAGCCAGGAGCTTTCCAATTCGATAGAAGTTTATACTCAAAATGAGCAGGCAGTTGTGACAGGAGGAAATCATATTGAGACTGAAGAGAAATTGTTTCTCTGTAATATTGGCTTTGGCGGTGCCAAAGAATTAGAAAAAGGCGCTGTGATTTTGGATAACCATCCCGAACAAAATTTAACAACCGATGTACCACAAGTAACGATCGTTGCAACTATGGATACCGAAGAACGTTTAGAGCATGATCAAGTAATAAGTACAATGACcgaaatgaaatcaaatgataCGACAgatgaatatatcaatacgCATATTTTGACTGCGGGGGTGGGGGATGAAGAcgatgatgagaatgatattGCAATCGATAATGACGATGTAGTGGACGATGGtggtgaagatgaagaagacgCGGAAATAGAGACGACAGAACAGGTACAAATACGTCACGAATCAGAACAATTAGAAAACCCTGGtgttaatgatgatgatgatgatgatgatgatgatgatgatgatgaagatatggatgaaaaatggGAGAAAGAAGTTCTGAGACGAAATGGAATTCTACCAAAACGGTCGACCCGAAATGTAAAGTCGACTGCTAGAAAATCGTCATATGGAATCGCCGAAATGGACGAAGATTCTCAAGAGTGTGATGAAGAaccaaaattcaaatgtaaaatttgtTCGCGACGTTATACTACGCAGAAAGGTTTAAAGAATCATTCACAAGTACATGATAAACAACACAAATGCCCGAGGTGTTTCAAATCATTCTATAAATTGGAGAATATGGAAAAACATGCGAAAATACATGAATCAAAGCCACATGCTTGTCAAATATGTCATACGTCATTCGCAAAATTACAAAGTTTAACAAGACATCTCAAAACTCACACAGAGAAATCAGCaagtgatgaaatgaaattggaaaacgatgatatgaaaaatgccgctataaaaaaagataaaagtgaaaatgataatacagacgatgatgatgatgatgaacaaacTTGTACACAAAGAAACGAGGCTGATGAATTCGAGAGTGCACCGGATTTATACAAGTGCGATGTATGTAATCAATTCTGTtcaactttgaaaaatttgaaacggCATTCACTCGTGCAcggtgataaaaaatattcgtgtACAGTGTGTAAAAAATGGTTCTTCCGACCTGACACGTTGAAGAAACACGCAGAGAAACATGGCCACGGATTACTGGATAATTTGGTTGATGAGAATAAACTATATGAATCAGATGATGAATCATTCAATCGTACGGGTAGTAGTGCTGGTGTGATGAACAGTAATGATATAAGTAAAAAAGATGATAGTGACGATGACGGTGGATCAGGGGAATATAAATGTCAACATTGTGACAAAATCATGGCAACAAAGAAAGGTTTACGACGACACGTATCCATGCACAAACCCAAAGCTGAACCAGCTACATGTGAAATATGCAAGAAGGTCTGTGCAAGTCAAGCGAGATTGGTATTACATCAAAAAACACACAATAAACCAAAGGAAAAAGTTCCGCGCGAGTATTTGTGTCATATATGTAGCAAAGTTTATCCAAGCAATTCATCGTTGACATATCATATGAGAACTCATACGGGTGTAAAACCACACGTGTGTAAAACTTGTAACAGTGGTTTCACAACCACTACAAGTTTGGCTAATCATATAAGAATTCATACTGGTGATAAGCCATATGTTTGTCACGTCTGTAGTGCAGCATTTGCCGTAAGTTCGGCATTCAGGCGTCATTTAACTCGTCATACAGGCGAAGCAAATTATTTGTGTAAAACGTGTGGAAAAGCATTCAAGAGATTGAGTACATTGAAGGAACACACGTATACGCATTCAGGTGAGAAGCCATATGTTTGTAAAACATGTGGAGCTGCTTATAGTCACAGTGGCAGTTTATTTGCTCACCAAAAACGTTGTAGAGCGCAGTACGGTGAAATGGTCACTGATGAACATCACGTTGCACAtcatattcatgtgaataacGTGCAGTCAGCAGTACGATCACTCGCCGTAATTGGTCAGATGTTTTAA
- Protein Sequence
- MNVSYFELPSNMDRVCRICLSEGTNLSPIFCTEHDVTNFSDLAQKIQVCGAIEMHERDGLPSLICDVCVYKASVAHEFRQQCQNSDTRLRLYYDKPARSSVTNSTTQTDSQSRIIVAKKIDTSQANYFVKEEMQGLSQELSNSIEVYTQNEQAVVTGGNHIETEEKLFLCNIGFGGAKELEKGAVILDNHPEQNLTTDVPQVTIVATMDTEERLEHDQVISTMTEMKSNDTTDEYINTHILTAGVGDEDDDENDIAIDNDDVVDDGGEDEEDAEIETTEQVQIRHESEQLENPGVNDDDDDDDDDDDDEDMDEKWEKEVLRRNGILPKRSTRNVKSTARKSSYGIAEMDEDSQECDEEPKFKCKICSRRYTTQKGLKNHSQVHDKQHKCPRCFKSFYKLENMEKHAKIHESKPHACQICHTSFAKLQSLTRHLKTHTEKSASDEMKLENDDMKNAAIKKDKSENDNTDDDDDDEQTCTQRNEADEFESAPDLYKCDVCNQFCSTLKNLKRHSLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLYESDDESFNRTGSSAGVMNSNDISKKDDSDDDGGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLVLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPYVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVTDEHHVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000764;
- 90% Identity
- iTF_00997219;
- 80% Identity
- -