Mvio000623.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17187172-17206281[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.61 4.6e+02 2.8 0.0 22 44 153 175 145 183 0.85 2 9 0.87 6.6e+02 2.3 0.0 22 51 181 210 176 212 0.83 3 9 0.21 1.6e+02 4.3 0.0 22 51 209 238 206 240 0.85 4 9 0.064 49 5.9 0.0 22 52 237 267 234 269 0.85 5 9 0.099 76 5.3 0.0 22 50 321 349 316 353 0.84 6 9 1.9 1.5e+03 1.2 0.0 22 46 349 373 346 380 0.80 7 9 1.9 1.5e+03 1.2 0.0 20 44 375 399 373 403 0.89 8 9 0.015 11 8.0 0.0 20 51 403 434 400 436 0.86 9 9 1.1 8.7e+02 1.9 0.0 22 45 433 456 430 462 0.87
Sequence Information
- Coding Sequence
- ATGGACATCAAACTAGAAATTAAGGAAGAACCTCTGGACTGTGATATGGGTTTGATGGAGTTGAAACCAGAAACTGAGGAAGAATGCTTCTCTTGTTCTGTTCATGACACTGAAGTAAAGTCTGAGAAGATGATACATGAAtgtaatgacaatgaaaaactgAATACCAATCCAAAATTCGAGAAAAAACTGCTGGACTCCAACAAAAATTTGCTTGAGTCCAAATCCAAAACTATTGAAGAAATTGCTCGTAATGTTGCTCAAGACACTGTGAAGAATGAGATAAAGGAGCAGAAAGAGCTTAACATAGCTTTAATGAAGGAGGAGATCACAATTGAGGAATCAAACTTTCCATTCAGTGGTCCAAGGGACAAGAAGCACCTcgaatgtgaaatttgtggaaagagctttaaaCGTGCATCTTATTTGAGAGATCATCGTTTGAtccatgagggcaagaaaccccACAAGTGTGaactttgtggaaagagttttgcCCAAGCATCTAATTTCCGCGTGCATGTTTTGagtcatgagggcaagaagccacataagtgtgaagtatGCGGCAAGAGCTTTACCCGAGCATCTTCTTTGAGggatcatcttttgattcatgagggcaagaagccacataaatgtgaagtttgtggaaagagttttacccaGTCATCTTATgtaaagaaacatcttttgatacatgagggcaagaagcctcATAAGTGTGAAATATGTGGAAAAGGCTTTACTGATGCATCTAATTTGAGagtacatcttttgattcatgaaggcaagaaaccacataagtgtgaattttgtggaaagagctttatccaTACATGTGCTTTGAAGGGACATCTCTTAACTTGTAAGTTCCAGAAACTATTTAAGTGCGGCATATGTGGGAAAGGGTTTAGCGAGATATATCATTTGAACAAACATCTTTTACTTCATGAAGGCAAGAAGccccataagtgtgaaatttgtggaaaggattTTAATGCTGCCTCTAATTTAAGAGGCCATCTTTTGATTCATGCAGGCAAGAAGccgcataaatgtgaaatttgtggaaagagttttacccaGGCATCTCATTTAAAGGGACATAGTTTGATTCATGACAGCAAGAAGCCACATGAATGTGAATTTTGTAGGAAGAGCTTTGCTGAGGCTTCTAAATTAAGGAAACATGTTCTTAACCATGAGAGCAATAAGCCCTATAAGTGTAAAATTTGTGAGAAAGGCTTCACTGATGCATCTAATtttaggaaacatcttttgattcatgagggcaaaaagccacataaatgtaaattttgtgggaagagttttacgcAAGCATATTCTTTGAGGGGACATCTTTTggttcatgagggcaaaaagctatataattgtgaattttgtaTGAAAAGTTTCTCCCAGGCACATCATTTGAGGATCCATCGTTTAATTCATAGGTAA
- Protein Sequence
- MDIKLEIKEEPLDCDMGLMELKPETEEECFSCSVHDTEVKSEKMIHECNDNEKLNTNPKFEKKLLDSNKNLLESKSKTIEEIARNVAQDTVKNEIKEQKELNIALMKEEITIEESNFPFSGPRDKKHLECEICGKSFKRASYLRDHRLIHEGKKPHKCELCGKSFAQASNFRVHVLSHEGKKPHKCEVCGKSFTRASSLRDHLLIHEGKKPHKCEVCGKSFTQSSYVKKHLLIHEGKKPHKCEICGKGFTDASNLRVHLLIHEGKKPHKCEFCGKSFIHTCALKGHLLTCKFQKLFKCGICGKGFSEIYHLNKHLLLHEGKKPHKCEICGKDFNAASNLRGHLLIHAGKKPHKCEICGKSFTQASHLKGHSLIHDSKKPHECEFCRKSFAEASKLRKHVLNHESNKPYKCKICEKGFTDASNFRKHLLIHEGKKPHKCKFCGKSFTQAYSLRGHLLVHEGKKLYNCEFCMKSFSQAHHLRIHRLIHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995474;
- 90% Identity
- iTF_00995474;
- 80% Identity
- iTF_00995474;