Mvio025140.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:14474885-14476312[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.057 44 6.1 0.0 23 52 2 31 1 32 0.86 2 16 0.29 2.2e+02 3.8 0.1 22 52 29 59 26 61 0.85 3 16 4.3 3.3e+03 0.1 0.1 23 46 58 81 54 88 0.64 4 16 0.0061 4.7 9.2 0.1 22 52 85 115 81 117 0.88 5 16 6.8 5.2e+03 -0.5 0.1 23 47 114 138 110 145 0.80 6 16 4.8 3.7e+03 -0.1 0.1 22 44 141 163 132 173 0.82 7 16 1.1 8.2e+02 2.0 0.0 21 46 168 193 163 199 0.86 8 16 0.24 1.9e+02 4.1 0.2 22 52 197 227 194 228 0.84 9 16 0.13 1e+02 4.9 0.3 21 52 224 255 221 257 0.81 10 16 0.69 5.3e+02 2.6 0.0 22 45 253 276 250 282 0.87 11 16 1.5 1.2e+03 1.5 0.0 22 48 309 335 306 340 0.79 12 16 0.71 5.4e+02 2.6 0.1 23 52 338 367 334 369 0.82 13 16 9.7 7.5e+03 -1.0 0.0 23 51 366 394 363 396 0.78 14 16 0.043 33 6.5 0.1 22 44 393 415 389 425 0.87 15 16 4 3.1e+03 0.2 0.1 26 52 425 451 421 452 0.86 16 16 0.28 2.1e+02 3.9 0.0 22 45 449 472 445 475 0.88
Sequence Information
- Coding Sequence
- ATGAAGCCACATATGTGCAAAGTTTGTGGGAGCAACTTTAAACAAGTGTCTGATTTAAgtagacatcttttgattcatgagggtcaaaagccacataaatgtgagaTTTGTAGGAATAGCTTTACCTATGCATCTGATTTAAAGAAACACCtcttgattcatgagggtaaaaagccacataaatgtgaagtttgtggaaagtgCTTCACTGCTATATCAACTATGAGAAaccatcttttaattcatgagggtaagaagccacataaatgtgaaatttgtggtaaAAGTTTTACCCAATTATCTAACTTGAGGACACATTTAATGATTCATGAAGAAATcaaaccacataagtgtgaagtatGTGGAAAGAGCTTCACGCGGGCATCATATTTAAGTAGACATATTATGtatcatgagggcaagaaaccacataaatgtgaagtttgtggcaaaAGTTTTACCCAATTATCTTATTTAAGAGCTCATCATTTTACACATGAGAGCATGAAGCCTCACATATGCGAAGTATGTGGTAAAAGTTTTAGAAAGATATATTACTTGAAGGAACATCTgttgattcatgaaggaaaaagGCCACATAAGTgtaaaatttgtgggaagagctttacacgGTTGTCTAATTTAAGGAGTCATATTTTCATACATGAAAGccagaaaccacataaatgtgaagtttgtgggaagaactatACTCTGATATctcatttaaggagacatcttttgattcatgagggtaagaaaccaaacatatgtgaagtttgtggaaagagctttacacaGGCATCTACTTTaaaggaacatcttttgattcatgagggtaagaaattgcataaatgtgaagtttgtgaaaagaaTTTCACTGCTGTATCTACTATGAGATaccatcttttaattcatgaaggcaaaaaaccacataagtgtgaaatttgtgggaagaactttataGGAATGTCGAATTTAAAGAAGCatgttttaattcatgagggcaaaaaacCACATAAGTGTGAGGTTTGTGGAAAGGAATTTACACATTTAGTTACCTTGagaagacatcttttgattcatgagggcaagaaaccacacAAGTGTGAATtctgtgggaagaactttacccTGGCATCTACtttaaggacacatcttttgattcatgagggtaagaaaccacataaatgtgaagtatgtgggaAATGTTTTACTCAGTCGTCTAACTTAAAGGAACATcatttgattcatgaaggaaagaagttGCGTAAGTGTCACATTTGTGGGAAATGCTTTACTCAGGCATCAACCTTGAGTGGACATCTCTTGATTCATAAAGAAaacaaaccacataaatgtgaagtgtgtgggaagagctttaccaagCCATCTAATATGAggaaacatcttttaattcataacTGA
- Protein Sequence
- MKPHMCKVCGSNFKQVSDLSRHLLIHEGQKPHKCEICRNSFTYASDLKKHLLIHEGKKPHKCEVCGKCFTAISTMRNHLLIHEGKKPHKCEICGKSFTQLSNLRTHLMIHEEIKPHKCEVCGKSFTRASYLSRHIMYHEGKKPHKCEVCGKSFTQLSYLRAHHFTHESMKPHICEVCGKSFRKIYYLKEHLLIHEGKRPHKCKICGKSFTRLSNLRSHIFIHESQKPHKCEVCGKNYTLISHLRRHLLIHEGKKPNICEVCGKSFTQASTLKEHLLIHEGKKLHKCEVCEKNFTAVSTMRYHLLIHEGKKPHKCEICGKNFIGMSNLKKHVLIHEGKKPHKCEVCGKEFTHLVTLRRHLLIHEGKKPHKCEFCGKNFTLASTLRTHLLIHEGKKPHKCEVCGKCFTQSSNLKEHHLIHEGKKLRKCHICGKCFTQASTLSGHLLIHKENKPHKCEVCGKSFTKPSNMRKHLLIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995434;
- 90% Identity
- iTF_00995434;
- 80% Identity
- iTF_00995434;